Locus 4128

Sequence ID 2L_DroMel_CAF1
Location 11,851,821 – 11,851,940
Length 119
Max. P 0.853557
window6515

overview

Window 5

Location 11,851,821 – 11,851,940
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.07
Mean single sequence MFE -38.25
Consensus MFE -19.84
Energy contribution -19.48
Covariance contribution -0.36
Combinations/Pair 1.35
Mean z-score -2.20
Structure conservation index 0.52
SVM decision value 0.80
SVM RNA-class probability 0.853557
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11851821 119 + 22407834
-CACAGGUUUUUCCACUGCCGCCAAAACCUGGCUGCCUGUCCACCCGAACUACCUCGAGCUCAACCUUGAGGCCCAGAAGGUGGCCAACAGGAGCCAUUACCAGGUCUACAAGGAUCUGC
-...(((((((..(......)..)))))))((((.((((((((((.......(((((((......))))))).......)))))...))))))))).....(((((((....))))))). ( -43.24)
>DroPse_CAF1 41825 120 + 1
UUCCAGGCUUCUCCGAGGCCUCCAAGACCUGGCUGCCUGUGCAUCCCAACUAUCCGGAACUCAAUUUGGAGGCCCAGAAGGCAGCCCCCAAGAGCCACUACAAGGUCUAUAAGGCGCUCA
.....((.....))(((((((...((((((((((((((((........))..((.((..(((......)))..)).))))))))))....((.....))...))))))...)))).))). ( -40.40)
>DroEre_CAF1 45579 119 + 1
-CACAGGUUUCUCCACUGCCGCUAAAACCUGGCUGCCUGUCCACCCGAACUACCUGCAACUCAACCUGGAGGCCCAGAAGGCGGCUAACAGGAGCCACUACUUGGUCUACAAGGACCUAC
-....(((((((.....((((((.....((((..(((..((((.......................)))))))))))..))))))....))))))).......(((((....)))))... ( -35.30)
>DroYak_CAF1 41649 119 + 1
-CACAGGUUUUUCCACGGCCACGAAAACCUGGCUGCCUGUGCACCCGAACUACCUGGAACUGAACCUGGAGGCCCAGAAGGCGGCCAAAAGGAGCCAUUACCAGGUGUACAAGGACCUAC
-...((((.......((((((........))))))((((((((((.(......((((..((........))..))))..(((..((....)).))).....).))))))).))))))).. ( -40.30)
>DroAna_CAF1 48277 120 + 1
UUCUAGGAUUCUCCGAUUCCUCAAAGACCUGGCUUCCAGUUCAUCCCAAUUACCUAGAACUGAACUUGGAGGCCCAAAAGGCGGCCAACAAAAGCCAUUAUAAGGUCUACACCGAUUUAA
....((((.((...)).))))...(((((((((((((((((((.................))))).)))))))).....(((...........)))......))))))............ ( -32.93)
>DroPer_CAF1 44301 120 + 1
UUCCAGGCUUCUCCGAGGCCUCCAAGACCUGGCUGCCAGUGCAUCCCAAUUAUCCGGAGCUCAAUUUGGAGGCCCAGAAAGCAGCCCCCAAGAGCCACUACAAGGUCUAUAAGGCGCUCA
......((((.((.(.((((((((((..((((...)))).((.(((.........)))))....))))))))))).)))))).(((....(((.((.......)))))....)))..... ( -37.30)
>consensus
_CACAGGUUUCUCCAAGGCCUCCAAAACCUGGCUGCCUGUGCACCCCAACUACCUGGAACUCAACCUGGAGGCCCAGAAGGCGGCCAACAAGAGCCACUACAAGGUCUACAAGGACCUAA
.....(((.........))).......(((((((((((((........))...............((((....)))).)))))))).......(((.......))).....)))...... (-19.84 = -19.48 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:16 2006