| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,827,195 – 11,827,290 |
| Length | 95 |
| Max. P | 0.547595 |
| Location | 11,827,195 – 11,827,290 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 89.32 |
| Mean single sequence MFE | -16.43 |
| Consensus MFE | -14.61 |
| Energy contribution | -14.83 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11827195 95 + 22407834 GUGAAAUUACAAUGUACUCACUUUAUUUACAAUAAAUAAAGGCAGCAGAGUAAGCAACAACUAUUCGUUCUUACAUCUAAAAAGCAACCGGCUUA ................((..(((((((((...)))))))))..)).((((((((.(((........)))))))).)))...((((.....)))). ( -15.20) >DroSec_CAF1 50645 91 + 1 --GAAAUUACAUUGCUUCUACUUUAUUCACAAUAAAUAAAGGCAGCA--GUAAGCAGCAGCUAUUCGUUCUUACAUCUGAAAAGCAACCGGCUUA --........((((((....(((((((.......)))))))..))))--))((((....(((.((((..........)))).))).....)))). ( -16.30) >DroSim_CAF1 16209 91 + 1 --GAAAUUACAUUGCUUCUACUUUAUUUACAAUAAAUAAAGGCAGCA--GUAAGCAACAGCUAUUCGUUCUUACAUCUGAAAAGCAACCGGCUUU --.........((((((...(((((((((...))))))))).(((..--(((((.(((........))))))))..)))..))))))........ ( -17.80) >consensus __GAAAUUACAUUGCUUCUACUUUAUUUACAAUAAAUAAAGGCAGCA__GUAAGCAACAGCUAUUCGUUCUUACAUCUGAAAAGCAACCGGCUUA ............((((....((((((((.....))))))))..))))..(((((.(((........)))))))).......((((.....)))). (-14.61 = -14.83 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:04 2006