Locus 4116

Sequence ID 2L_DroMel_CAF1
Location 11,813,592 – 11,813,693
Length 101
Max. P 0.719873
window6499

overview

Window 9

Location 11,813,592 – 11,813,693
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 83.27
Mean single sequence MFE -35.16
Consensus MFE -23.74
Energy contribution -24.54
Covariance contribution 0.80
Combinations/Pair 1.20
Mean z-score -1.91
Structure conservation index 0.68
SVM decision value 0.40
SVM RNA-class probability 0.719873
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11813592 101 + 22407834
GGGAUUAUUGGGUGAUUAGGCUUAAUUGGUGGCUAUCUCACUGAUGAGGCGAUGGCCGUCAGUUGGGCAAGGUAGUAAUGCAACACUUUUCACACAUCUUU
........((.((((..(((((((((((..(((((((.(.((....))).)))))))..)))))))))...(((....)))....))..)))).))..... ( -35.50)
>DroSec_CAF1 2488 101 + 1
GGGAUUAUUUUGAGAUUGAGCCUAGUUGGUGGCUAUCUCACUGAUGAGGCGAUGGCCGCCAGUUGGGCGAGCUACUAGUGCAACACUUUUCACACAUCUUU
(((((.....(((((.((.(((((..(((((((((((.(.((....))).)))))))))))..)))))..((.......))..))..)))))...))))). ( -36.20)
>DroSim_CAF1 2487 101 + 1
GGGAUUAUUUUGAGAUUGCGCCUAGUUGGUUGCUAUCUCACUGGUGGGGCGAUGGCCGCCAGUUGGGCGAGCUAGUAGUGCAACACUUUUCACACAUCUUC
(((((.....((((((.(((((.....)).))).))))))..((((..(((.((((((((.....)))).))))....)))..))))........))))). ( -34.40)
>DroEre_CAF1 2554 101 + 1
GGGAUUGUGCCGAGAUUGGGCCUGAAUGGUGGCUAUCACACUGAUGGGGCGAUGGCCGCCAGUUGGGCGAGCAGUUAAGCCAACACUUUUCACACAUCUUU
(((((((((..(((.....(((..(.(((((((((((.(.((....))).))))))))))).)..)))(.((......)))....)))..)))).))))). ( -38.20)
>DroYak_CAF1 2549 101 + 1
GUGAUUAUGCCGAGAUUGGGCAAAUUUGGUGUCUAUCACACGGUUGGAGCGUUGGCCGCCAGUUGGGCGAGCAGUUGAGCCAACACUUUUCACACAUCUUU
(((((.((((((((.((....)).))))))))..)))))...(((((..((...((((((.....)))).))...))..)))))................. ( -31.50)
>consensus
GGGAUUAUUCCGAGAUUGGGCCUAAUUGGUGGCUAUCUCACUGAUGGGGCGAUGGCCGCCAGUUGGGCGAGCUAGUAAUGCAACACUUUUCACACAUCUUU
...................((((((((((((((((((.(.(....)..).))))))))))))))))))................................. (-23.74 = -24.54 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:00 2006