Locus 4114

Sequence ID 2L_DroMel_CAF1
Location 11,810,926 – 11,811,023
Length 97
Max. P 0.844608
window6497

overview

Window 7

Location 11,810,926 – 11,811,023
Length 97
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.82
Mean single sequence MFE -31.19
Consensus MFE -24.37
Energy contribution -24.21
Covariance contribution -0.16
Combinations/Pair 1.10
Mean z-score -1.90
Structure conservation index 0.78
SVM decision value 0.76
SVM RNA-class probability 0.844608
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11810926 97 + 22407834
UGGCUAAAAAGCCACCCGCAAAAGCUUAUGCAACCGGGUGGCCUACGAAAUGUAUC------------------UGAAUCUGUGU-----GCAAAAUCUGAUUCAGCGCAGAGCUACGGU
(((((.....((((((((.....((....))...))))))))........(((..(------------------((((((.....-----.........))))))).))).))))).... ( -30.44)
>DroSec_CAF1 18244 96 + 1
UGGCUAAAAAGCCACCCGCAA-AGCUUAUGCAACCGGGUGGCCUACGAAAUGUAUC------------------UGAAUCUGUGU-----GCAAAACCUGAUUCAGCGCUGAGCUACGGU
(((((.....((((((((...-.((....))...)))))))).........((..(------------------((((((.(.((-----.....))).))))))).))..))))).... ( -31.50)
>DroSim_CAF1 18203 96 + 1
UGGCUAAAAAGCCACCCGCAA-AGCUUAUGCAACCGGGUGGCCUACGAAAUGUAUC------------------UGAAUCUGUGU-----GCAAAAUCUGAUUCAGCGCUGAGCUACGGU
(((((.....((((((((...-.((....))...)))))))).........((..(------------------((((((.....-----.........))))))).))..))))).... ( -29.54)
>DroEre_CAF1 16945 101 + 1
UGGCUAAAAAGCCGCCCGCGA-AGUUUAUGCAAUCGGGUGGCCUACGAAAUGAAUC------------------UGAAUCUGAGUCAGAAUCUAAAUCUGAUUCAGCGGUGAGCUACGGU
(((((.....((((((((...-.((....))...)))))))).............(------------------((...((((((((((.......)))))))))))))..))))).... ( -33.20)
>DroYak_CAF1 17923 119 + 1
UGGCUAAAAAGCCUCCCGAAA-AGUUUACGCAACCGGGUGGCCUACAAAAUGAAUCUGUAUCUGUAUCUGUAUCUGAAUCUGAAUCGGAAUCUAAAUCUGAUUCAGCGGAGAGCUACGGU
..........(((.((((...-............)))).)))...................(((((.((...((((...((((((((((.......)))))))))))))).)).))))). ( -31.26)
>consensus
UGGCUAAAAAGCCACCCGCAA_AGCUUAUGCAACCGGGUGGCCUACGAAAUGUAUC__________________UGAAUCUGUGU_____GCAAAAUCUGAUUCAGCGCUGAGCUACGGU
(((((.....((((((((.....((....))...))))))))................................((((((...................))))))......))))).... (-24.37 = -24.21 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:58 2006