| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,808,839 – 11,808,945 |
| Length | 106 |
| Max. P | 0.792540 |
| Location | 11,808,839 – 11,808,945 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.25 |
| Mean single sequence MFE | -34.35 |
| Consensus MFE | -21.09 |
| Energy contribution | -20.67 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.792540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11808839 106 + 22407834 GAGGCAGCGAGAGAGCGAGAGCGACUACGAGAGACACCGCAAGAUACAGAUACAAUGCGUGCUCGAGCCCGCAU---------GUGUGUGUGUGCGUGCGAUUGCGUUGUUCUUA-- ......((......))(((((((((..(....)....((((.((((((.(((((.((((.((....)).)))))---------)))).))))).).)))).....))))))))).-- ( -38.30) >DroPse_CAF1 21991 88 + 1 GAGGCAACGAGAGAGCGAGAGAUGGU--------GAACGAGAGAUACAGAUACAAUGCGUGC-------------------GUGUGUGUGUGUGAACGCGAUUGCGUUGUUCUUA-- ..(....)..((((((((..(((.((--------(..(....)(((((.(((((.((....)-------------------)))))).)))))...))).)))...)))))))).-- ( -25.40) >DroSec_CAF1 16139 106 + 1 GAGGCAGCGAGAGAGCGAGAGCGACUACGAGAGACACCGCAAGAUACAGAUACAAUGCGUGCUCGAGC----A----U---GUGUGUGUGUGUGCGUGCGAUUGCGUUGUUCUUAUU ......((......))(((((((((..(....)....((((.(.((((.(((((.(((((((....))----)----)---)))))))).))))).)))).....)))))))))... ( -37.00) >DroSim_CAF1 16079 112 + 1 GAGGCAGCGAGAGAGCGAGAGCGACUACGAGAGACACCGCAAGAUACAGAUACAAUGCGUGCUCGAGCCCGCAUGUGU---GUGUGUGUGUGUGCGUGCGAUUGCGUUGUUCUUA-- ......((......))(((((((((..(((..(.(((((((..(((((.((((((((((.((....)).))))).)))---)).))))).)))).))))..))).))))))))).-- ( -42.80) >DroYak_CAF1 15862 114 + 1 GAGGCAGCGAGAGAGCGAGAGCGAGUACGAGAGACACCGCAAGAUACAGAUACAAUGCGUGCUCGAACCCGCAUGUGAGUG-UGUAUGUGUGUGCGUGCGAUUGCGUUGUUCUUA-- ..........((((((((..((((((.(....)))..((((.((((((.(((((.(((((((........)))))))....-))))).))))).).)))).)))).)))))))).-- ( -37.20) >DroPer_CAF1 23841 88 + 1 GAGGCAACGAGAGAGCGAGAGAUGGU--------GAACGAGAGAUACAGAUACAAUGCGUGC-------------------GUGUGUGUGUGUGAACGCGAUUGCGUUGUUCUUA-- ..(....)..((((((((..(((.((--------(..(....)(((((.(((((.((....)-------------------)))))).)))))...))).)))...)))))))).-- ( -25.40) >consensus GAGGCAGCGAGAGAGCGAGAGCGACUACGAGAGACACCGCAAGAUACAGAUACAAUGCGUGCUCGAGC____A________GUGUGUGUGUGUGCGUGCGAUUGCGUUGUUCUUA__ (((((((((..(..(((....................(....)(((((.(((((............................))))).)))))...)))..)..))))).))))... (-21.09 = -20.67 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:57 2006