Locus 4110

Sequence ID 2L_DroMel_CAF1
Location 11,805,957 – 11,806,055
Length 98
Max. P 0.979638
window6491

overview

Window 1

Location 11,805,957 – 11,806,055
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 93.37
Mean single sequence MFE -23.16
Consensus MFE -20.92
Energy contribution -20.88
Covariance contribution -0.04
Combinations/Pair 1.06
Mean z-score -1.67
Structure conservation index 0.90
SVM decision value 1.84
SVM RNA-class probability 0.979638
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11805957 98 - 22407834
CACAUGAGGUAAGUGAUUUCAAUUGCUGCAGCUUUCACAUCAAAUUACAGGGUGACUUUGCCACUCACCACCCAAAGGGGUUAUUCAACCCCAUUCGA
....((.(((..(((((((.....((....)).........)))))))..(((((.........))))))))))..((((((....))))))...... ( -22.64)
>DroSec_CAF1 13272 98 - 1
CACAUGAGGUAAGUGAUUUCAAUUGCUGCUGUUUUCACAUCAAAAUACAGGGUGACUUUGCAUCUCACCACCCAAAGGGGUUAUUCAACCCCAUUCGA
....((.(((..((((...((........))...))))............(((((.........))))))))))..((((((....))))))...... ( -23.00)
>DroSim_CAF1 13205 94 - 1
----UGAGGUAAGUGAUUUCAAUUGCUGCUGUUUUCACAUCAAAAUACAGGGUGACUUUGCCGCUCACCACCCAAAGGGGUUAUUCAACCCCAUUCGA
----((.(((..((((...((........))...))))............((((((......).))))))))))..((((((....))))))...... ( -23.30)
>DroEre_CAF1 12208 98 - 1
CACAUGAGGUAAGUGAUUUCAAUUGCCGCUGCUUUCACAUCAAAAUACAGGGUGACUUUACCGCUCACCACCCAAAGGGGUUAUUCAACCCCAUUUGA
.......(((((.((....)).)))))............(((((.....(((((..............)))))...((((((....)))))).))))) ( -25.64)
>DroYak_CAF1 13127 98 - 1
CACAUGAGGUAAGUGAUUUCAAUUGCCGCUGCUUUCACAUCAAAAUACAGGGUGACUUUACCCCUCACCACCCAAAGGGUUUAUUCAACCCCAUUUGA
.......(((((.((....)).)))))............(((((.....(((((..............)))))...(((((.....)))))..))))) ( -21.24)
>consensus
CACAUGAGGUAAGUGAUUUCAAUUGCUGCUGCUUUCACAUCAAAAUACAGGGUGACUUUGCCGCUCACCACCCAAAGGGGUUAUUCAACCCCAUUCGA
.......(((((.((....)).)))))......................(((((..............)))))...((((((....))))))...... (-20.92 = -20.88 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:52 2006