| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,795,245 – 11,795,351 |
| Length | 106 |
| Max. P | 0.884437 |
| Location | 11,795,245 – 11,795,351 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 94.21 |
| Mean single sequence MFE | -11.93 |
| Consensus MFE | -12.15 |
| Energy contribution | -11.93 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.66 |
| Structure conservation index | 1.02 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11795245 106 - 22407834 AAC----AAUACACAGACAAACUGACAGACACACGACCCACACAUUAUGCUUCCUUUUAAAUGCAACAUUUUAUACAUUUAAUUAUCGAGAAUUAAAUGCUUAAAAUACA ...----......(((.....))).......................(((............)))..((((((..(((((((((......)))))))))..))))))... ( -11.90) >DroSec_CAF1 2649 108 - 1 AACUA--ACUACACAGACAAACUGACAGACAUACGACCUACACAUUAUGCUUCCUUUUAAAUGCAACAUUUUAUACAUUUAAUUAUCGUGAAUUAAAUGCUUAAAAUACA .....--......(((.....))).......................(((............)))..((((((..(((((((((......)))))))))..))))))... ( -11.90) >DroSim_CAF1 2650 110 - 1 AACUCACACUACACAGACAAACUGACAGACAUACGACCUACACAUUAUGCUUCCUUUUAAAUGCAACAUUUUAUACAUUUAAUUAUCGAGAAUUGAAUGCUUAAAAUACA .............(((.....))).......................(((............)))..((((((..(((((((((......)))))))))..))))))... ( -12.00) >consensus AACU___ACUACACAGACAAACUGACAGACAUACGACCUACACAUUAUGCUUCCUUUUAAAUGCAACAUUUUAUACAUUUAAUUAUCGAGAAUUAAAUGCUUAAAAUACA .............(((.....))).......................(((............)))..((((((..(((((((((......)))))))))..))))))... (-12.15 = -11.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:30 2006