| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,790,824 – 11,790,944 |
| Length | 120 |
| Max. P | 0.652386 |
| Location | 11,790,824 – 11,790,944 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.67 |
| Mean single sequence MFE | -35.46 |
| Consensus MFE | -22.62 |
| Energy contribution | -23.02 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11790824 120 - 22407834 UAAAUGGAUUAACGGCGCAUCCUCUUGGAUUUCUUCAAAGUCUGACCCACCAGUUGAGCAAUAUGUUUGCGCAAUGCCAAGAAAGGCUUCAAGCAGACGCGCUGCUCGACGAGACCCACA ....(((.....((((((((((....)))).........(((((........((((.((((.....)))).))))(((......)))......)))))))))))(((...)))..))).. ( -35.00) >DroSec_CAF1 48572 120 - 1 UAGAUGGAUUACUUGCGCAUCUUCUUGGAUUUCUUCAAAGUCUUGUCCACCAGUUGAGCAAUAUGUUUGCGCAACGCCAAAAAAGGCUUCAAGCAGAUGCCCUGCUCAACGAGACCCACA ..(.(((((.((((....((((....)))).......))))...))))).).((((((((...(((((((.....(((......))).....)))))))...)))))))).......... ( -31.80) >DroSim_CAF1 47857 120 - 1 UACAUGGAUUACUUGCGCAUCUUCUUGGAUUUCUUCACAGUCUUGUCCACCAGUUGAGCAAUAUGUUUGCGCAACGCCAAAAAAGGCUUCAAGCAGAUGCGCUCCUCAACGAGACCCACA ....(((.......((((((((.((((((.......................((((.((((.....)))).))))(((......))))))))).))))))))..(((...)))..))).. ( -36.60) >DroEre_CAF1 58993 119 - 1 -ACAUGAAUUACUUGCUCAUCCUCUUAGAUUCCUUUAAGGUCUGGGUCACCAUAAGAGCGAUCCGUUUGCGCAAGUCCAAGAAAGGCUUCAAGCAGACGCGUUGCUCGACGAGACCAACA -..............(((.....((((((....))))))((((((....)))...(((((((.(((((((..(((((.......)))))...))))))).)))))))))))))....... ( -36.10) >DroYak_CAF1 50760 120 - 1 UGCAAGGAUUACUUGCGCAUCUUCUUAGAAUCCUUCAAAGUCUGGGUCACCAUGCGAGCGAUCCGUUUGCGCAACUCCAGAAAUGGCUUCAAGCAGACGCGCUGCUCGACGAGGCCAACA .(((((.....)))))((.((.((...............((.(((....))).))(((((...(((((((......(((....)))......)))))))...))))))).)).))..... ( -37.80) >consensus UACAUGGAUUACUUGCGCAUCUUCUUGGAUUUCUUCAAAGUCUGGGCCACCAGUUGAGCAAUAUGUUUGCGCAACGCCAAAAAAGGCUUCAAGCAGACGCGCUGCUCGACGAGACCCACA .....................((((((((((.......))))))).......((((((((...(((((((.....(((......))).....)))))))...)))))))))))....... (-22.62 = -23.02 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:27 2006