Locus 41

Sequence ID 2L_DroMel_CAF1
Location 181,567 – 181,660
Length 93
Max. P 0.525480
window60

overview

Window 0

Location 181,567 – 181,660
Length 93
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 82.85
Mean single sequence MFE -32.69
Consensus MFE -20.73
Energy contribution -21.93
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.63
SVM decision value -0.02
SVM RNA-class probability 0.525480
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 181567 93 + 22407834
UGCUGCAGUCGAAUUCUCUGCC------------UCUGGCGCUGCUCGCCAACUUAUGUGAC-CUGAGCAGAGGGCUGGAAAAUGCUGCAUUCAGCUCCACCACCA----------
(((.(((.((.(.((((((((.------------(((((((.....)))))((....))...-..)))))))))).).))...))).)))................---------- ( -27.50)
>DroSec_CAF1 28432 94 + 1
UGCUGCAGUCGAAUUCUCUGCC------------UCUGGCGCUGCUCGCCAAAUUCUGUGACCCUGAGCAGAGGGCUGGAAACUGCUGCAUUCAGCUCCACCACCA----------
(((.(((((....((((..(((------------(.(((((.....)))))...(((((........))))))))).))))))))).)))................---------- ( -29.10)
>DroSim_CAF1 28764 93 + 1
UGCUGCAGUCGAAUUCUCUGCC------------UCUGGCGCUGCUCGCCAACUUCUGUGAC-CUGAGCAGAGGGCUGGAAACUGCUGCAUUCAGCUCCUCCACCA----------
(((.(((((....((((..(((------------(.(((((.....)))))...(((((...-....))))))))).))))))))).)))................---------- ( -28.80)
>DroEre_CAF1 32001 111 + 1
UGCUGCAGUCGAAUUCUCUGCCUCUGCCUCUGCUUCUGUCGCUGCUCGCCAAAUGCUGUGAC-CUGAGCAGAGGGCUGGAAACUGCAGCAUUCAGCUCCACAACCACCACCA----
(((((((((....((((..(((.....((((((((..(((((.((.........)).)))))-..))))))))))).)))))))))))))......................---- ( -41.80)
>DroYak_CAF1 29684 114 + 1
UGCUGCAGUCGAAUUCUCUGCC-CUGCCUCUGCCUCUGUCUCUGCUCUCCAAAUGCUGUGAC-CUGAGCAGAGGGCUGAAAACUGCAGCAUUGAGCUCCACCACCACCACUAGCAC
(((((((((....(((...(((-(....(((((.((.(((.(.((.........)).).)))-..))))))))))).))).)))))))))....(((..............))).. ( -36.24)
>consensus
UGCUGCAGUCGAAUUCUCUGCC____________UCUGGCGCUGCUCGCCAAAUUCUGUGAC_CUGAGCAGAGGGCUGGAAACUGCUGCAUUCAGCUCCACCACCA__________
(((.((((((.(.(((((((((..............(((((.....)))))..............).)))))))).).))..)))).))).......................... (-20.73 = -21.93 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:58 2006