Locus 4095

Sequence ID 2L_DroMel_CAF1
Location 11,783,832 – 11,783,926
Length 94
Max. P 0.981655
window6453

overview

Window 3

Location 11,783,832 – 11,783,926
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 96.06
Mean single sequence MFE -19.64
Consensus MFE -18.22
Energy contribution -18.30
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -1.65
Structure conservation index 0.93
SVM decision value 1.89
SVM RNA-class probability 0.981655
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11783832 94 - 22407834
GGCAUUGCAUAUGUAAUUGCAGCAGCAAUUUUGAAGCAAAAGCAACAAAGAGAGCGCUUGUUUCACAGCUAAUAUUUAAACGCUGAAAGCGAAA
((((((((...(((....)))...)))))..((((((((..((..........))..))))))))..)))..........(((.....)))... ( -21.00)
>DroSec_CAF1 41612 91 - 1
---AUUGCAUAUGUAAUUGCAGCAGCAAUUUUGAAGCAAAAGCAACAAAGAAAGCGCUUGUUUCACAGCUAAUAUUUAAACGCUGAAAGCGAAA
---.((((......((((((....)))))).((((((((..((..........))..))))))))((((............))))...)))).. ( -20.80)
>DroSim_CAF1 40706 94 - 1
GGCAUUGCAUAUGUAAUUGCAGCAGCAAUUUUGAAGCAAAAGCAACAAAGAAAGCGCUUGUUUCACAGCUAAUAUUUAAACGCUGAAAGCGAAA
((((((((...(((....)))...)))))..((((((((..((..........))..))))))))..)))..........(((.....)))... ( -21.00)
>DroEre_CAF1 51982 94 - 1
GACAUUGCAUAUGUAAUUGCAGCAGCAAUUUUGGAGCAAAAGCAACAAAGAAAGCGCUUGUUUCACAGCUAAUAUUUAAACGCUGAAAGGGAAA
...(((((...(((....)))...)))))..((((((((..((..........))..))))))))((((............))))......... ( -17.90)
>DroYak_CAF1 43575 94 - 1
GGCAUUGCAUAUGUAAUUGCAGCAGCAAUUUUGAAGCAAAAGCAACAAAGAAAGCGCUUGUUUCACAGCUAAUAUUUAAACGUUGAUAGGGAAA
((((((((...(((....)))...)))))..((((((((..((..........))..))))))))..)))........................ ( -17.50)
>consensus
GGCAUUGCAUAUGUAAUUGCAGCAGCAAUUUUGAAGCAAAAGCAACAAAGAAAGCGCUUGUUUCACAGCUAAUAUUUAAACGCUGAAAGCGAAA
....((((......((((((....)))))).((((((((..((..........))..))))))))((((............))))...)))).. (-18.22 = -18.30 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:13 2006