| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,232,321 – 1,232,477 |
| Length | 156 |
| Max. P | 0.933694 |
| Location | 1,232,321 – 1,232,437 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 93.69 |
| Mean single sequence MFE | -27.20 |
| Consensus MFE | -26.50 |
| Energy contribution | -26.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.97 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1232321 116 + 22407834 AUAUAUAUGUAUUUUUUUUUGGCUGCGAUGUUUGUGCAAUUGUAUGUGAAACAUUUCUGGACUU-UUAACCCUUUUUUAUGGGUCUGACUGGGGUCGGAGGUCUUGGACUGUCGCUU ((((((((((((......(((....))).....)))))..)))))))(..(((.(((.((((((-(..(((((...(((......)))..)))))..))))))).))).)))..).. ( -27.50) >DroSec_CAF1 9695 110 + 1 AUAU------UCUUUUUUUUGGCUGCGAUGUUUGUGCAAUUGUAUGUGAAACAUUUCUGGACUU-UUAACCCUUUUUUAUGGGUCUGACUGGGGUCGGAGGUCUUGGACUGUCGCUU ....------..............(((((((((((((....))))...))))..(((.((((((-(..(((((...(((......)))..)))))..))))))).)))..))))).. ( -27.40) >DroSim_CAF1 5477 110 + 1 AUAU------UCUUU-UUUUGGCUGCGAUGUUUGUGCAAUUGUAUGUGAAACAUUUCUGGACUUUUUAACCCUUUUUUAUGGGUCUGACUGGGGUCGGAGGUCUUGGACUGUCGCUU ....------.....-........(((((((((((((....))))...))))..(((.((((((....((((........))))(((((....))))))))))).)))..))))).. ( -26.50) >DroYak_CAF1 5602 105 + 1 AU-----------UUUUUUUGGCUGCGAUGUUUGUGCAAUUGUAUGUGAAACAUUUCUGGACUU-UUAACCCUUUUUUAUGGGUCUGACUGGGGUCGGAGGUCUUGGACUGUCGCUU ..-----------...........(((((((((((((....))))...))))..(((.((((((-(..(((((...(((......)))..)))))..))))))).)))..))))).. ( -27.40) >consensus AUAU______UCUUUUUUUUGGCUGCGAUGUUUGUGCAAUUGUAUGUGAAACAUUUCUGGACUU_UUAACCCUUUUUUAUGGGUCUGACUGGGGUCGGAGGUCUUGGACUGUCGCUU ........................(((((((((((((....))))...))))..(((.(((((......(((........)))((((((....))))))))))).)))..))))).. (-26.50 = -26.50 + 0.00)
| Location | 1,232,321 – 1,232,437 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 93.69 |
| Mean single sequence MFE | -17.60 |
| Consensus MFE | -17.60 |
| Energy contribution | -17.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1232321 116 - 22407834 AAGCGACAGUCCAAGACCUCCGACCCCAGUCAGACCCAUAAAAAAGGGUUAA-AAGUCCAGAAAUGUUUCACAUACAAUUGCACAAACAUCGCAGCCAAAAAAAAAUACAUAUAUAU ..((((........(((....(((....))).(((((........)))))..-..)))......(((((..((......))...)))))))))........................ ( -17.60) >DroSec_CAF1 9695 110 - 1 AAGCGACAGUCCAAGACCUCCGACCCCAGUCAGACCCAUAAAAAAGGGUUAA-AAGUCCAGAAAUGUUUCACAUACAAUUGCACAAACAUCGCAGCCAAAAAAAAGA------AUAU ..((((........(((....(((....))).(((((........)))))..-..)))......(((((..((......))...)))))))))..............------.... ( -17.60) >DroSim_CAF1 5477 110 - 1 AAGCGACAGUCCAAGACCUCCGACCCCAGUCAGACCCAUAAAAAAGGGUUAAAAAGUCCAGAAAUGUUUCACAUACAAUUGCACAAACAUCGCAGCCAAAA-AAAGA------AUAU ..((((........(((....(((....))).(((((........))))).....)))......(((((..((......))...)))))))))........-.....------.... ( -17.60) >DroYak_CAF1 5602 105 - 1 AAGCGACAGUCCAAGACCUCCGACCCCAGUCAGACCCAUAAAAAAGGGUUAA-AAGUCCAGAAAUGUUUCACAUACAAUUGCACAAACAUCGCAGCCAAAAAAA-----------AU ..((((........(((....(((....))).(((((........)))))..-..)))......(((((..((......))...)))))))))...........-----------.. ( -17.60) >consensus AAGCGACAGUCCAAGACCUCCGACCCCAGUCAGACCCAUAAAAAAGGGUUAA_AAGUCCAGAAAUGUUUCACAUACAAUUGCACAAACAUCGCAGCCAAAAAAAAGA______AUAU ..((((........(((....(((....))).(((((........))))).....)))......(((((..((......))...)))))))))........................ (-17.60 = -17.60 + -0.00)
| Location | 1,232,358 – 1,232,477 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 99.16 |
| Mean single sequence MFE | -33.68 |
| Consensus MFE | -34.08 |
| Energy contribution | -34.08 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 1.01 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1232358 119 + 22407834 AAUUGUAUGUGAAACAUUUCUGGACUU-UUAACCCUUUUUUAUGGGUCUGACUGGGGUCGGAGGUCUUGGACUGUCGCUUGCAGUCCAUUUACCUGCACAAUUGAAUGAUUUCCUAAGCC ...((((.(((((........((((((-(..(((((...(((......)))..)))))..)))))))((((((((.....))))))))))))).))))...................... ( -33.60) >DroSec_CAF1 9726 119 + 1 AAUUGUAUGUGAAACAUUUCUGGACUU-UUAACCCUUUUUUAUGGGUCUGACUGGGGUCGGAGGUCUUGGACUGUCGCUUGCAGUCCAUUUACCUGCACAAUUGAAUGAUUUCCUAAGCC ...((((.(((((........((((((-(..(((((...(((......)))..)))))..)))))))((((((((.....))))))))))))).))))...................... ( -33.60) >DroSim_CAF1 5507 120 + 1 AAUUGUAUGUGAAACAUUUCUGGACUUUUUAACCCUUUUUUAUGGGUCUGACUGGGGUCGGAGGUCUUGGACUGUCGCUUGCAGUCCAUUUACCUGCACAAUUGAAUGAUUUCCUAAGCC ....((.((.(((((((((.(((((((((((((((........)))).)))..))))))(.((((..((((((((.....))))))))...)))).).))...))))).)))).)).)). ( -33.60) >DroYak_CAF1 5628 119 + 1 AAUUGUAUGUGAAACAUUUCUGGACUU-UUAACCCUUUUUUAUGGGUCUGACUGGGGUCGGAGGUCUUGGACUGUCGCUUGCAGUCCAUUUACCUGCACAAUUGAAUGAUUUCCUAAGCG ....((.((.(((((((((.(((((((-(..((((........))))......))))))(.((((..((((((((.....))))))))...)))).).))...))))).)))).)).)). ( -33.90) >consensus AAUUGUAUGUGAAACAUUUCUGGACUU_UUAACCCUUUUUUAUGGGUCUGACUGGGGUCGGAGGUCUUGGACUGUCGCUUGCAGUCCAUUUACCUGCACAAUUGAAUGAUUUCCUAAGCC ....((.((.(((((((((.(((((((.(((((((........)))).)))...)))))(.((((..((((((((.....))))))))...)))).).))...))))).)))).)).)). (-34.08 = -34.08 + -0.00)
| Location | 1,232,358 – 1,232,477 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 99.16 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -28.90 |
| Energy contribution | -28.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.729076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1232358 119 - 22407834 GGCUUAGGAAAUCAUUCAAUUGUGCAGGUAAAUGGACUGCAAGCGACAGUCCAAGACCUCCGACCCCAGUCAGACCCAUAAAAAAGGGUUAA-AAGUCCAGAAAUGUUUCACAUACAAUU (((((.(((...(((......)))..(((...((((((((....).)))))))..))))))(((....))).(((((........)))))..-)))))((....)).............. ( -29.10) >DroSec_CAF1 9726 119 - 1 GGCUUAGGAAAUCAUUCAAUUGUGCAGGUAAAUGGACUGCAAGCGACAGUCCAAGACCUCCGACCCCAGUCAGACCCAUAAAAAAGGGUUAA-AAGUCCAGAAAUGUUUCACAUACAAUU (((((.(((...(((......)))..(((...((((((((....).)))))))..))))))(((....))).(((((........)))))..-)))))((....)).............. ( -29.10) >DroSim_CAF1 5507 120 - 1 GGCUUAGGAAAUCAUUCAAUUGUGCAGGUAAAUGGACUGCAAGCGACAGUCCAAGACCUCCGACCCCAGUCAGACCCAUAAAAAAGGGUUAAAAAGUCCAGAAAUGUUUCACAUACAAUU (((((.(((...(((......)))..(((...((((((((....).)))))))..))))))(((....))).(((((........)))))...)))))((....)).............. ( -29.10) >DroYak_CAF1 5628 119 - 1 CGCUUAGGAAAUCAUUCAAUUGUGCAGGUAAAUGGACUGCAAGCGACAGUCCAAGACCUCCGACCCCAGUCAGACCCAUAAAAAAGGGUUAA-AAGUCCAGAAAUGUUUCACAUACAAUU .......((((.((((...(((..(((((...((((((((....).)))))))..))))..(((....))).(((((........)))))..-..)..))).)))))))).......... ( -28.90) >consensus GGCUUAGGAAAUCAUUCAAUUGUGCAGGUAAAUGGACUGCAAGCGACAGUCCAAGACCUCCGACCCCAGUCAGACCCAUAAAAAAGGGUUAA_AAGUCCAGAAAUGUUUCACAUACAAUU .......((((.((((...(((..(((((...((((((((....).)))))))..))))..(((....))).(((((........))))).....)..))).)))))))).......... (-28.90 = -28.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:22 2006