| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,776,859 – 11,776,954 |
| Length | 95 |
| Max. P | 0.547381 |
| Location | 11,776,859 – 11,776,954 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.81 |
| Mean single sequence MFE | -28.98 |
| Consensus MFE | -19.89 |
| Energy contribution | -20.03 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11776859 95 + 22407834 ---UAAUGGGUGC---AGGAUUUUCCAAUUGCUUGGACCGAA-------------CGGG----ACAGA--CGGGCAGAUGUUUUUGGUCUAUGCAGGCGGUUUGCAUUUGGCAUUUAUUG ---((((((((((---..(((...((..((((.(((((((((-------------...(----(((..--(.....).))))))))))))).))))..)).....)))..)))))))))) ( -28.50) >DroSec_CAF1 34793 94 + 1 ---UAAUGGGUGU---UGGAUUUUCCAAUUGCUUGGACUGAA-------------CGGG-----CAGG--CGGGCAGAUGUUUUUGGUCUAUGCAGGCGGUUUGCAUUUGGCAUUUAUUG ---((((((((((---..(((...((..((((.(((((((((-------------((.(-----(...--...))...)))))..)))))).))))..)).....)))..)))))))))) ( -29.70) >DroSim_CAF1 33883 94 + 1 ---UAAUGGGUGU---UGGAUUUUCCAAUUGCUUGGACCGAA-------------CGGG-----CAGG--CGGGCAGAUGUUUUUGGUCUAUGCAGGCGGUUUGCAUUUGGCAUUUAUUG ---((((((((((---..(((...((..((((.(((((((((-------------((.(-----(...--...))...)))..)))))))).))))..)).....)))..)))))))))) ( -31.40) >DroEre_CAF1 45294 86 + 1 ---UAAUGGGUGC---AGGAUUUUCCAAUUGCUUGGACCGAA-------------CGG---------------GCAGAUGUUUUUGGUCUAUGCAGGCGGUUUGCAUUUGGCAUUUAUUG ---((((((((((---..(((...((..((((.(((((((((-------------..(---------------((....)))))))))))).))))..)).....)))..)))))))))) ( -27.70) >DroYak_CAF1 36368 89 + 1 GGGUAAUGGGUGC---AGGAUUUUCCAAUUGCUUGGACCGAA-------------CGG---------------GCAGAUGUUUUUGGUCUAUGCAGGCGGUUUGCAUUUGGCAUUUAUUG ...((((((((((---..(((...((..((((.(((((((((-------------..(---------------((....)))))))))))).))))..)).....)))..)))))))))) ( -27.90) >DroAna_CAF1 36699 115 + 1 -----CUGGGUGUGAGGGGAUUUUCCAAUUGCUUGGUCCGCAAAGAGGUAAAGAGCGAGCAGGGCAGGGCAGGGCAGAUGUUUUUGGUCUAUGCAAGCGGUUUGCAUUUGGCAUUUAUUG -----(..((((..(..((.....)).((((((((((((((...(..((.....))...)...)).))))(((.((((....)))).)))...)))))))))..))))..)......... ( -28.70) >consensus ___UAAUGGGUGC___AGGAUUUUCCAAUUGCUUGGACCGAA_____________CGGG_____CAGG__CGGGCAGAUGUUUUUGGUCUAUGCAGGCGGUUUGCAUUUGGCAUUUAUUG ....(((((((((.....(.....((..((((.(((((((((........................................))))))))).))))..))....).....))))))))). (-19.89 = -20.03 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:03 2006