Locus 4086

Sequence ID 2L_DroMel_CAF1
Location 11,775,613 – 11,775,731
Length 118
Max. P 0.749534
window6440

overview

Window 0

Location 11,775,613 – 11,775,731
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 92.10
Mean single sequence MFE -21.90
Consensus MFE -18.76
Energy contribution -18.52
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.38
Structure conservation index 0.86
SVM decision value 0.47
SVM RNA-class probability 0.749534
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11775613 118 - 22407834
AUUGUCUUUAUGGCAAACUUUAAUCAAGUUCUGCAUAUCGAAGCGAAGCAAAGACGUGCCCCAAAAGAGGAAAUAAGUACCAAAUAGGUGCACAGAGAAAAAAAACAAGAUUCAAUGG
.((.(((((..((((..((((......(((.(((........))).)))))))...))))...))))).)).....(((((.....))))).((..(((...........)))..)). ( -20.50)
>DroSec_CAF1 33584 115 - 1
AUUGUCUUUAUGGCAAACUUUAAUCAAGUUCUGCAUAUCGAAGCGAAGCAAAGACGUUU-CCAAAAAAGGAAAUAAGUACCAAAUAGGUGCACAGAAAAAAAAAACAACAUUCAAU--
...((((((...((((((((.....))))).)))...(((...)))...))))))((((-((......))))))..(((((.....))))).........................-- ( -23.00)
>DroSim_CAF1 32683 117 - 1
AUUGUCUUUAUGGCAAACUUUAAUCAAGUUCUGCAUAUCGAAGCGAAGCAAAGACGUGGCCCAAAAGAGGAAAUAAGUACCAAAUAGGUGCACAGAAAA-AAAAACAACAUUCAAUGG
.((.(((((..(((.(((((.....)))))...((..((...((...))...))..)))))..))))).)).....(((((.....)))))........-.................. ( -19.70)
>DroEre_CAF1 43996 116 - 1
AUUGUCUUUAUGGCAAACUUUAAUCAAGUUCUGCAUAUCGAAACGAAGUGAAGACGUGGCCCGAAAGAGGAAAUAAGUACCAAAUAGGUGCACAGA-AA-AAAACCAACACUAAGUGC
...((((((((.((((((((.....))))).)))...(((...))).))))))))(((.(((....).))......(((((.....))))).....-..-........)))....... ( -27.00)
>DroYak_CAF1 35106 117 - 1
AUUGUCUUUAUGGCAAACUUUAAUCAAGUUCUGCAUAUCGAAACGAAGCGAAGACGUGGCCCAAAAGAGGAAAUAAGUACCAAAUAGGUGCACGGAGAA-AAAAACAACAUUUAAUGU
...((((((...((((((((.....))))).)))...(((...)))...))))))(((..((......))......(((((.....)))))........-........)))....... ( -19.30)
>consensus
AUUGUCUUUAUGGCAAACUUUAAUCAAGUUCUGCAUAUCGAAGCGAAGCAAAGACGUGGCCCAAAAGAGGAAAUAAGUACCAAAUAGGUGCACAGAAAA_AAAAACAACAUUCAAUGG
...((((((...((((((((.....))))).)))...(((...)))...)))))).....((......))......(((((.....)))))........................... (-18.76 = -18.52 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:00 2006