Locus 4082

Sequence ID 2L_DroMel_CAF1
Location 11,772,358 – 11,772,454
Length 96
Max. P 0.917505
window6431

overview

Window 1

Location 11,772,358 – 11,772,454
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 83.73
Mean single sequence MFE -22.97
Consensus MFE -19.14
Energy contribution -20.37
Covariance contribution 1.22
Combinations/Pair 1.04
Mean z-score -2.48
Structure conservation index 0.83
SVM decision value 1.11
SVM RNA-class probability 0.917505
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11772358 96 - 22407834
CAUUGCCAACCCGUGGCACUGACUUUUUCCUGCUGUUGCAUUUUAAACAGGAUCCUCUUGGCUUUUUUGCGUUGACAGCAGCUACAAACAUACAUU
((.(((((.....))))).))........(((((((((((.......((((.....)))).......)))...))))))))............... ( -24.44)
>DroSec_CAF1 30397 96 - 1
CAUUGCCACCCCGUGGCACUGACUUUUUCCUGCUGUUGCAUUUUAAACAGGAUCCUCUUGGCUUUUUCGCGUUGACAGCAGCUACAUACAUACAUU
((.((((((...)))))).))........((((((((((........((((.....))))((......))).)))))))))............... ( -24.90)
>DroSim_CAF1 29506 96 - 1
CACUGCCACCCCGUGGCACUGACUUUUUCCUGCUGUUGCAUUUUAAACAGGAUCCUCUUGGCUUUUUCGCGUUGACAGCAGCUAAAUACAUACAUU
((.((((((...)))))).))...(((..((((((((((........((((.....))))((......))).)))))))))..))).......... ( -25.30)
>DroEre_CAF1 40884 92 - 1
CAUUGCCACCUCCUGGCACUGACUUUUUCCUGCUGUUGCAUUUUAAACAGGAUCCUCUUGGCUUUUUCGCGUUGACAGCAGUUA----CAUACAUU
((.(((((.....))))).))........((((((((((........((((.....))))((......))).)))))))))...----........ ( -23.20)
>DroYak_CAF1 31879 92 - 1
CGUUGCCACCUCCUGGCACUGACUUUUUCCUGCUGUUGCAUUUUAAACAGGAUCCUCUUGGCUUUUUCGCGUUGACAGCAGUUC----CAUACAUU
((.(((((.....))))).))........((((((((((........((((.....))))((......))).)))))))))...----........ ( -22.50)
>DroAna_CAF1 32943 76 - 1
--U----------UUUUGCUAAUUUUUGCCUGCUGUUGCAUUUUAAACAGUAUGGGCUUGGCUUUUUCGCGUUGACAGCAGUUACA--------UG
--.----------..(((((.......((((((((((........))))))..))))(..((........))..).))))).....--------.. ( -17.50)
>consensus
CAUUGCCACCCCGUGGCACUGACUUUUUCCUGCUGUUGCAUUUUAAACAGGAUCCUCUUGGCUUUUUCGCGUUGACAGCAGCUACA__CAUACAUU
((.(((((.....))))).))........((((((((((........((((.....))))((......))).)))))))))............... (-19.14 = -20.37 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:51 2006