Locus 4081

Sequence ID 2L_DroMel_CAF1
Location 11,771,433 – 11,771,536
Length 103
Max. P 0.999669
window6429 window6430

overview

Window 9

Location 11,771,433 – 11,771,536
Length 103
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 92.63
Mean single sequence MFE -26.44
Consensus MFE -22.95
Energy contribution -23.15
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.87
SVM decision value 2.12
SVM RNA-class probability 0.988500
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11771433 103 + 22407834
UUAUUUUUAAGUGCCAACCAUGUGCGCACUUAACAACACCGGAAGCAACUGCCAAAGAGCUGCUUCA---------ACUGCUUCUUCAGCUGCUUUUCCGUGCUU-----UGCUAGC
......((((((((((......)).))))))))(((..(((((((((.(((...((((((.......---------...)).))))))).))))..)))).)..)-----))..... ( -25.30)
>DroSec_CAF1 29439 103 + 1
UUAUUUUUAAGUGCCAACCAUGUGCGCACUUAACAACACCGGAAGCAACUGCCAAAGCGCUGCUUCC---------ACUGCUUCUUCAGCUGCUUUUCCGUGCUU-----UGCUAGC
......((((((((((......)).))))))))(((..(((((((((.(((...(((((.((....)---------).)))))...))).))))..)))).)..)-----))..... ( -27.00)
>DroSim_CAF1 28555 103 + 1
UUAUUUUUAAGUGCCAACCAUGUGCGCACUUAACAACACCGGAAGCAACUGCCAAAGCGCUGCUUCC---------ACUGCUUCUUCAGCUGCUUUUCCGUGCUU-----UCCUAGC
......((((((((((......)).))))))))......((((((((.(((...(((((.((....)---------).)))))...))).))))..)))).(((.-----....))) ( -26.80)
>DroEre_CAF1 39919 112 + 1
UUAUUUUUAAGUGCCAACCAUGUGUGCACUUAACAACACCGGAAGCAACUGCCAAAGCGCUGCUUCAACUGCUUCAACUGCUUCUUCAGCUGCUUUUCCGUGCUU-----UGCGAGC
......((((((((((......)).))))))))(((..(((((((((.(((...(((((..((.......))......)))))...))).))))..)))).)..)-----))..... ( -26.70)
>DroYak_CAF1 30829 108 + 1
UUAUUUUUAAGUGCCAACCAUGUGUGCACUUAACAACACCGGAAGCAACUGCCAAAGCGCUGCUUCA---------ACUGCUUCUUCAGCUGCUUUUCCGUGCUUUGCUUUGCUAGC
......((((((((((......)).))))))))..........(((((..((.(((((((.......---------...(((.....))).........))))))))).)))))... ( -26.41)
>consensus
UUAUUUUUAAGUGCCAACCAUGUGCGCACUUAACAACACCGGAAGCAACUGCCAAAGCGCUGCUUCA_________ACUGCUUCUUCAGCUGCUUUUCCGUGCUU_____UGCUAGC
......((((((((((......)).))))))))...(((.(((((((.(((...(((((...................)))))...))).))))..))))))............... (-22.95 = -23.15 +   0.20)

alignment

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secondary structure

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dotplot

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Window 0

Location 11,771,433 – 11,771,536
Length 103
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 92.63
Mean single sequence MFE -40.68
Consensus MFE -34.56
Energy contribution -34.76
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -4.55
Structure conservation index 0.85
SVM decision value 3.86
SVM RNA-class probability 0.999669
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11771433 103 - 22407834
GCUAGCA-----AAGCACGGAAAAGCAGCUGAAGAAGCAGU---------UGAAGCAGCUCUUUGGCAGUUGCUUCCGGUGUUGUUAAGUGCGCACAUGGUUGGCACUUAAAAAUAA
(((....-----.))).((((..((((((((..((((.(((---------((...)))))))))..)))))))))))).((((.((((((((.((......)))))))))).)))). ( -39.30)
>DroSec_CAF1 29439 103 - 1
GCUAGCA-----AAGCACGGAAAAGCAGCUGAAGAAGCAGU---------GGAAGCAGCGCUUUGGCAGUUGCUUCCGGUGUUGUUAAGUGCGCACAUGGUUGGCACUUAAAAAUAA
(((....-----.))).((((..((((((((..(((((..(---------(....))..)))))..)))))))))))).((((.((((((((.((......)))))))))).)))). ( -40.20)
>DroSim_CAF1 28555 103 - 1
GCUAGGA-----AAGCACGGAAAAGCAGCUGAAGAAGCAGU---------GGAAGCAGCGCUUUGGCAGUUGCUUCCGGUGUUGUUAAGUGCGCACAUGGUUGGCACUUAAAAAUAA
(((....-----.))).((((..((((((((..(((((..(---------(....))..)))))..)))))))))))).((((.((((((((.((......)))))))))).)))). ( -40.20)
>DroEre_CAF1 39919 112 - 1
GCUCGCA-----AAGCACGGAAAAGCAGCUGAAGAAGCAGUUGAAGCAGUUGAAGCAGCGCUUUGGCAGUUGCUUCCGGUGUUGUUAAGUGCACACAUGGUUGGCACUUAAAAAUAA
(((....-----.))).((((..((((((((..(((((.((((...(....)...)))))))))..)))))))))))).((((.((((((((.((......)))))))))).)))). ( -42.40)
>DroYak_CAF1 30829 108 - 1
GCUAGCAAAGCAAAGCACGGAAAAGCAGCUGAAGAAGCAGU---------UGAAGCAGCGCUUUGGCAGUUGCUUCCGGUGUUGUUAAGUGCACACAUGGUUGGCACUUAAAAAUAA
(((.....)))..((((((((..((((((((..(((((.((---------((...)))))))))..))))))))))).))))).((((((((.((......))))))))))...... ( -41.30)
>consensus
GCUAGCA_____AAGCACGGAAAAGCAGCUGAAGAAGCAGU_________UGAAGCAGCGCUUUGGCAGUUGCUUCCGGUGUUGUUAAGUGCGCACAUGGUUGGCACUUAAAAAUAA
(((..........))).((((..((((((((..(((((.....................)))))..)))))))))))).((((.((((((((.((......)))))))))).)))). (-34.56 = -34.76 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:50 2006