Locus 408

Sequence ID 2L_DroMel_CAF1
Location 1,231,567 – 1,231,685
Length 118
Max. P 0.859747
window652

overview

Window 2

Location 1,231,567 – 1,231,685
Length 118
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 96.05
Mean single sequence MFE -25.17
Consensus MFE -21.95
Energy contribution -23.45
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.87
SVM decision value 0.82
SVM RNA-class probability 0.859747
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1231567 118 + 22407834
CCAUUUGCUUUUUAUUGUUCAAAAACUGUUGAAAAGUUUUGCCAUAAUUUUGGUAGAUUUUUUUGCAUCUUACUCUUUUUAUCUAUCGAAAUUCGUAGGUUUUUGGUAAUAAUGAAAA
.........((((((((((((((((((((.(((((((((.((((......))))))))))))).)))...............(((.((.....)))))))))))))..))))))))). ( -25.10)
>DroSec_CAF1 8923 118 + 1
CCAUUUGCUUUUUAUUGUUCAAAAACUGUUGAAAAGUUUUGCCAUAAUUUUGGUAGAUUUUUUUGCAUCUUACUGUUUUUAUCUAUCGAAAUUCGGUGGGUUUUGGAAAUAAUGAAAA
.........(((((((((((.((((((((.(((((((((.((((......))))))))))))).)))...............((((((.....))))))))))).).)))))))))). ( -27.00)
>DroSim_CAF1 4704 118 + 1
CCAUUUGCUUUUUAUUGUUCAAAAACUGUUGAAAAGUUUUGCCAUAAUUUUGGUAGAUUUUUUUGCAUCUUACUGUUUUUAUCUAUCGAAAUUCGGUGGGUUUUGGUAAUAAUGAAAA
.........(((((((((((.((((((((.(((((((((.((((......))))))))))))).)))...............((((((.....))))))))))).).)))))))))). ( -27.00)
>DroYak_CAF1 4803 117 + 1
CCAUUUGCUUUUUAUUGUUCGAAAACUGUUGAAAAGUUUUGCCAUAAUUUUGGUAGAUUU-UUUGCAUCUUACUCUUUUUAUCUAUCGAAAUUCGCAGGGUUUUAGUAAUAAUGAAAA
.........(((((((((((.((((((.((....))..((((...(((((((((((((..-...................))))))))))))).)))))))))).).)))))))))). ( -21.60)
>consensus
CCAUUUGCUUUUUAUUGUUCAAAAACUGUUGAAAAGUUUUGCCAUAAUUUUGGUAGAUUUUUUUGCAUCUUACUCUUUUUAUCUAUCGAAAUUCGGAGGGUUUUGGUAAUAAUGAAAA
.........(((((((((((.((((((((.(((((((((.((((......))))))))))))).)))...............((((((.....))))))))))).).)))))))))). (-21.95 = -23.45 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:18 2006