| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,764,917 – 11,765,017 |
| Length | 100 |
| Max. P | 0.631363 |
| Location | 11,764,917 – 11,765,017 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 81.04 |
| Mean single sequence MFE | -26.91 |
| Consensus MFE | -16.33 |
| Energy contribution | -17.89 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11764917 100 + 22407834 GCUUAAAUAGAGCGAAAGCUUUUUGAGGCUAAGCCCACUG---GGUAUAAGAGUUCGAAUAUAUGGCGCUUUGAACUAG---CCGA---GGGACUUUUUAUAGUGGGAA ((((....(((((....)))))...))))....(((((((---.....((((((((.......((((...........)---))).---.))))))))..))))))).. ( -32.00) >DroSec_CAF1 23000 100 + 1 GCUUAAAUAGAGCGAAAGCUUUUUGAGGCUAAGCCCACUG---GGUAUAAGAGAUCGUAUAUAUGGCACUUUCAACUAG---CCAA---GGGACUUUUUAUAGUGGGAA ((((....(((((....)))))...))))....(((((((---.....(((((.((.(.....((((...........)---))).---).)))))))..))))))).. ( -29.00) >DroSim_CAF1 22054 100 + 1 GCUUAAAUAGAGCGAGAGCUUUUUGAGGCUAAGCCCACUG---GGUAUAAGAGUUCGUAAAUAUGGCACUUUCAACUAG---CCGA---GGUACUUUUUAUAGUGGGAA ((((....(((((....)))))...))))....(((((((---.....((((((.(.(.....((((...........)---))))---.).))))))..))))))).. ( -28.00) >DroEre_CAF1 30470 100 + 1 GCUUAAAUAGAGCGAGAGCUUUUCGAGGCUAAGCCCACUG---GGUAUAAGAGUUCAUAUGUACGGCAUUUUGAACAAG---CCGA---GGUACUUUUUAUAGUGGGAA ((((....(((((....)))))...))))....(((((((---.....(((.(((((.(((.....)))..)))))..(---(...---.)).)))....))))))).. ( -30.70) >DroYak_CAF1 24257 100 + 1 GCUUAAAUAUAGCGAGAGCUUUUUGAGGCUUAGCCCACUG---GGUAUAAGAGUUCAUAUAUAUGGCACGUUGAACUAG---UCGA---GGGACUUUUUAUACUGGGAA .((((((...(((....))).))))))..........((.---((((((((((((((..............))))).((---((..---..))))))))))))).)).. ( -25.64) >DroAna_CAF1 24827 105 + 1 AAUUAAAUAGAACGAAAGCUUUCACAGGCUAAGCCCUCUAAAAAAUAUAAGAGUUUG---GUAGGG-AAAAUGAAUGAGACCCCGUGAUAGGAUAAAUGAUAAUGGGAA ............(....).(((((..(((...)))(((((..((((......)))).---.)))))-........))))).(((((................))))).. ( -16.09) >consensus GCUUAAAUAGAGCGAAAGCUUUUUGAGGCUAAGCCCACUG___GGUAUAAGAGUUCGUAUAUAUGGCACUUUGAACUAG___CCGA___GGGACUUUUUAUAGUGGGAA ((((....(((((....)))))...))))....(((((((........((((((((.......(((................))).....))))))))..))))))).. (-16.33 = -17.89 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:47 2006