| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,759,769 – 11,759,873 |
| Length | 104 |
| Max. P | 0.723566 |
| Location | 11,759,769 – 11,759,873 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 74.97 |
| Mean single sequence MFE | -33.57 |
| Consensus MFE | -22.94 |
| Energy contribution | -23.25 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11759769 104 - 22407834 -UCCUGCG-------UCCUGUGUCCUUCGUCCUGCAUCCU---UCGUCCUGCAUCCAUGCUGCUGGUGCUGCGGAAGCAUGCGUGCGUGCAAGGACGGAAAACUGGAACAUUUU--C -.......-------(((...((..((((((((((((...---.......((((.((((((.(((......))).)))))).)))))))).))))))))..)).))).......--. ( -34.90) >DroSec_CAF1 18031 105 - 1 AUCCUGCC-------UCCUGUGUCCUUCGUCCUGCAUCCU---UCGUCCUGCAACCAUGCUUCUGGUGCUGCGGAAGCAUGCGUGCGUGCAAGGACGGAAAACUGGAACAUUUU--C ........-------(((...((..((((((((((((...---.......(((..((((((((((......))))))))))..))))))).))))))))..)).))).......--. ( -37.30) >DroSim_CAF1 17125 108 - 1 AUCCUGCC-------UCCUGUGUCCUUCGUCCUGCAUCUUGCAUCGUCCUGCGUCCAUGCUGCUGGUGCUGCGGAAGCAUGCGUGCGUGCAAGGACGGAAAACUGGAACAUUUU--C ........-------(((...((..((((((((((((...(((.(((..(((.(((..((.((....)).))))).))).)))))))))).))))))))..)).))).......--. ( -36.70) >DroEre_CAF1 25364 91 - 1 AUCCU---------------------UCGUCCUUCGUCCU---UCGUCCUGCAUCCGUGCUGGUGGUCCUGCGGAGGCAUGCGUGCGUGCAAGGACGAAAAACUGGAACAUUUU--C .(((.---------------------..((..((((((((---(.(..(.((((.((((((..((......))..)))))).)))))..))))))))))..)).))).......--. ( -32.30) >DroWil_CAF1 22530 96 - 1 ----------------CUUGUGUUUAUUGUCCUUAUUUCA---GGUUAUU--GUUGUUGUUGUUGGUGAGUUGAAUGCGUGCGUGCAUGCAAGGACAACAAACUGGAACAUUUCUGU ----------------.....((((.((((((((..((((---(.(((((--(..........)))))).))))).(((((....))))))))))))).)))).............. ( -25.30) >DroYak_CAF1 19078 112 - 1 AUCCUGCGUUCUGUGUCCUGUGUCCCUCGUCCUUCGUCCU---UCGUCCUGCAUCCAUGCUGGUGGUGCUGCGGAAGCAUGCGUGCGUGCAAGGACGGAAAACUGGAGCAUUUU--C ...................(((..((..((..((((((((---(..(((.(((.((((....)))))))...))).(((((....))))))))))))))..)).))..)))...--. ( -34.90) >consensus AUCCUGC________UCCUGUGUCCUUCGUCCUGCAUCCU___UCGUCCUGCAUCCAUGCUGCUGGUGCUGCGGAAGCAUGCGUGCGUGCAAGGACGGAAAACUGGAACAUUUU__C ...............(((.((.....(((((((...............(((((.(((......)))...)))))..(((((....))))).)))))))...)).))).......... (-22.94 = -23.25 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:46 2006