Locus 4072

Sequence ID 2L_DroMel_CAF1
Location 11,753,704 – 11,753,824
Length 120
Max. P 0.662097
window6416

overview

Window 6

Location 11,753,704 – 11,753,824
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.50
Mean single sequence MFE -32.96
Consensus MFE -26.60
Energy contribution -27.52
Covariance contribution 0.92
Combinations/Pair 1.08
Mean z-score -1.53
Structure conservation index 0.81
SVM decision value 0.27
SVM RNA-class probability 0.662097
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11753704 120 - 22407834
ACGAGCGUACUCGUAAAUGCUAUCGUGUUCAACAGAAUAAGGAGCCAUGCGGCUUUUUCGAUGGCGAAAAGGGUUGCAAGGACUUCUGCUACAGGCCCAAUAAGUAAAUCAGAACUAGCA
(((((....)))))...(((((....((((.........(((((((.(((((((((((((....)))))).))))))).)).)))))((.....))...............))))))))) ( -33.90)
>DroSec_CAF1 11953 120 - 1
ACGAGCGUACUCGUAAAUGCUAUCGUGUUCAACAGAAUAAGGAGCCAUGCGGCUUUUUCGAUGGCGAAAAGGGUUGCAAGGACUUCUGCCACAGGCCCAUUAAAUAAAUCCGAACUAGCA
(((((....)))))...(((((((((((((....)))))(((((((.(((((((((((((....)))))).))))))).)).)))))(((...)))..............)))..))))) ( -35.60)
>DroSim_CAF1 10854 120 - 1
ACGAGCGUACUCGUAAAUGCUAUCGUGUUCAACAGAAUAAGGAGCCAUGCGGCUUUUUCGAUGGCGAAAAGGGUUGCAAGGACUUCUGCCACAGGCCCAUUAAAUAAAUCAGAACUAGCA
(((((....)))))...(((((....((((.........(((((((.(((((((((((((....)))))).))))))).)).)))))(((...)))...............))))))))) ( -35.30)
>DroEre_CAF1 19341 120 - 1
ACGAGCGUACUCAUAAAUGUUAUCGUGUCCAAAAGAAUAAGGAGCCAUGUGGCUUUUUCGAUGGCGAAAAGGGUUGCAAGGACUUCUGCUUGAAGAACACUGGAUAAAUCAGAAUGAGCA
.........(((((.....((((((((((...(((....(((((((.((..(((((((((....)))))).)))..)).)).))))).)))...).))))..)))))......))))).. ( -32.20)
>DroYak_CAF1 12585 108 - 1
ACGAGCGUACUCAUAAAUGCUAUCGUGUUCAACAGAAUAAGGAGCCAUGCGGUUUCUUCGAUGGCGAAAAGGGAUGCAAGGACUUCUGC------------GGAUAAAUCAGAAUGAGCA
....(((((..(.....(((((((((((((....)))))(((((((....))))))).)))))))).....)..)))......(((((.------------........)))))...)). ( -27.80)
>consensus
ACGAGCGUACUCGUAAAUGCUAUCGUGUUCAACAGAAUAAGGAGCCAUGCGGCUUUUUCGAUGGCGAAAAGGGUUGCAAGGACUUCUGCCACAGGCCCAUUAAAUAAAUCAGAACUAGCA
(((((....)))))...(((((((.(((((....)))))(((((((.(((((((((((((....)))))).))))))).)).)))))........................))..))))) (-26.60 = -27.52 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:37 2006