Locus 4071

Sequence ID 2L_DroMel_CAF1
Location 11,753,257 – 11,753,377
Length 120
Max. P 0.919059
window6415

overview

Window 5

Location 11,753,257 – 11,753,377
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.25
Mean single sequence MFE -38.48
Consensus MFE -26.98
Energy contribution -28.98
Covariance contribution 2.00
Combinations/Pair 1.14
Mean z-score -2.69
Structure conservation index 0.70
SVM decision value 1.13
SVM RNA-class probability 0.919059
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11753257 120 - 22407834
AAAUGGCGUGCGUGGAGAAAAAUACUUGGGUAUUCGAUAGAAAUGCCCAAACUUGUAUUUCUGUCAUUCCUGACAAGGAACCCUGCGGGCACUUUGUUAGCGAAAAGGCUUGCAAGGAUC
.....((.((((((........)))..((((....(((((((((((........)))))))))))..((((....)))))))).))).)).((((((.(((......))).))))))... ( -40.70)
>DroSec_CAF1 11511 120 - 1
AAAUAGCUUGCGUGGAGAAAAAUACUUGGGUAUUCGACAGAAAUUCUCAAACUUGUAUUUCUGUCAUUCCUGACCAGGAACCAUGCGGGCACUUUGUUAGCGAAAAGGCUUGCAAGGAUC
.....((((((((((.....(((((....))))).(((((((((.(........).))))))))).(((((....))))))))))))))).((((((.(((......))).))))))... ( -44.90)
>DroSim_CAF1 10422 120 - 1
AAAUCGCUUGCGUGGAGAAAAAUACUUGGGUAUUCGACAGAAAUUCUCAAACUUGUAUUUCUGUCAUUCCUGACCAGGAACCCUGCGGGCACUUUGUUAGCGAAAAGGCUUGCAAGGAUC
.....(((((((((........)))..((((....(((((((((.(........).)))))))))..((((....)))))))).)))))).((((((.(((......))).))))))... ( -40.90)
>DroEre_CAF1 18894 120 - 1
AAAACCAUUGCGUCGAGGAAAAUACUUGGGUAUUCGACAUAAAUUCUCAAACUUGCGAUCCCGUGAUUCCUAACAAGGAACCCUGCGGGCUCUUUAUUAGCGAAAAGGCUUGCAAGGAGG
....((.....(((((.....((((....))))))))).............(((((((.((((((.(((((....)))))...)))))).))......(((......))).)))))..)) ( -30.70)
>DroYak_CAF1 12141 120 - 1
AAAACCCCUGCGUCGAGAAAAACACUUGGGUAUUCGAUCAGAAUGCUCGAACUUGUAAUCCUGUGACUCCUGACAAGGAACCCUGCGGGCACUUUAUUAGCGAAAAGGCUUGUAAGGAGG
....(((((((((((((....(((.((((((((((.....))))))))))...)))....)).))))((((....)))).....)))))..((((((.(((......))).)))))).)) ( -35.20)
>consensus
AAAUCGCUUGCGUGGAGAAAAAUACUUGGGUAUUCGACAGAAAUUCUCAAACUUGUAUUUCUGUCAUUCCUGACAAGGAACCCUGCGGGCACUUUGUUAGCGAAAAGGCUUGCAAGGAUC
.....((((((...(((.......)))((((....(((((((((.(........).)))))))))..((((....)))))))).)))))).((((((.(((......))).))))))... (-26.98 = -28.98 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:36 2006