Locus 4064

Sequence ID 2L_DroMel_CAF1
Location 11,748,777 – 11,748,871
Length 94
Max. P 0.873562
window6404

overview

Window 4

Location 11,748,777 – 11,748,871
Length 94
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 86.37
Mean single sequence MFE -24.28
Consensus MFE -19.06
Energy contribution -19.14
Covariance contribution 0.08
Combinations/Pair 1.10
Mean z-score -1.96
Structure conservation index 0.79
SVM decision value 0.88
SVM RNA-class probability 0.873562
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11748777 94 - 22407834
UGAGUGCAAGAACGCUUAAUAGUUUUAUUGCCUGGCCACAAGCGUUCUUGAUACUCAGCAAUCAACGACUUACAUAGACUAGACGAAUG-------GAUGU
(((((((((((((((((....(((.........)))...))))))))))).))))))(((.(((.((.((..........)).))..))-------).))) ( -23.30)
>DroSec_CAF1 7084 93 - 1
UGAGUGCAAGAACGUUUAAUAGUUUUAUUGC-UUGCCACAAGCGUUCUUGAUACUCAGUAAUCAACGACUUACAUAGACUAGACGAAUG-------GAAGU
(((((((((((((((((...(((......))-)......))))))))))).))))))((((........)))).....(((......))-------).... ( -22.60)
>DroSim_CAF1 5935 93 - 1
UGAGUGCAAGAACGUUUAAUAGUUUUAUUGC-UGGCCACAAGCGUUCUUGAUACUCAGUAAUCAACGACUUACAUAGACUAGACGAAUG-------GAAGU
(((((((((((((((((..((((......))-)).....))))))))))).))))))((((........)))).....(((......))-------).... ( -24.20)
>DroEre_CAF1 14198 100 - 1
UGAGUGCACGAACGUUUAAUAGUUUUAUUGC-UGGCCACAAGCGUUUUUGAUACUCAGUAAUCAAGGUCUUACAUAGAAUAUGUGAUUGCCUAUAGAAAGC
((((((((.((((((((..((((......))-)).....)))))))).)).))))))(((((((...(((.....))).....)))))))........... ( -25.20)
>DroYak_CAF1 7297 100 - 1
UGAGUGCAAGAACGUUUAAUAGUUUUAUUGC-UGGCCACAAGCGUUCUUGAUACUCACUAAUUAAGGUUUUACAUAGAAUAGACGAUAGUUUAUAGAAAGU
(((((((((((((((((..((((......))-)).....))))))))))).)))))).....................((((((....))))))....... ( -26.10)
>consensus
UGAGUGCAAGAACGUUUAAUAGUUUUAUUGC_UGGCCACAAGCGUUCUUGAUACUCAGUAAUCAACGACUUACAUAGACUAGACGAAUG_______GAAGU
(((((((((((((((((....(((.........)))...))))))))))).))))))............................................ (-19.06 = -19.14 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:25 2006