Locus 4059

Sequence ID 2L_DroMel_CAF1
Location 11,740,985 – 11,741,091
Length 106
Max. P 0.783082
window6397

overview

Window 7

Location 11,740,985 – 11,741,091
Length 106
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 85.92
Mean single sequence MFE -29.61
Consensus MFE -22.24
Energy contribution -22.80
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.83
Structure conservation index 0.75
SVM decision value 0.56
SVM RNA-class probability 0.783082
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11740985 106 - 22407834
GUAUCUUUUAUAGCAUUUUUUGCCACACUUUGCUAAUCAGUUU-GGAUAAUGAGCUGUUUAGCAGGGCUUUAAUGGGUCCGCCGCCUGACAGGUGGACUCAAAUUUG
............(((.....)))....(((((((((.((((((-(.....))))))).)))))))))......((((((((((........))))))))))...... ( -36.50)
>DroSec_CAF1 199947 106 - 1
GUAUAUUUUCUACCACUGCAUGCCACAUUUUACUAAUCAGUUU-GGAUAAUUAGCUGUUUUCAAGGGCUUUAAUGGGUCCGCCGCCUGACAGGUGGACUCAAAUUUG
.....................(((.............(((((.-........)))))........))).....((((((((((........))))))))))...... ( -23.60)
>DroSim_CAF1 200558 106 - 1
GUAUCUUUUCUGCCACUGCAUGCCACACUUUACUAAUCAGUUU-GGAUAAUUAGCUGUUUUCCAGGGCUUUAAUGGGUCCGCCGCCUGACAGGUGGACUCAAAUUUG
...........(((((((.((..............))))))((-(((.(((.....))).)))))))).....((((((((((........))))))))))...... ( -28.44)
>DroYak_CAF1 194234 107 - 1
UAAUUUUUUACAGUGCUGCAUGCCACACAUUACUAAUCAGUUUCGGUUAAUGAACUGUUUUGCCGAGCUUUAAUGGGUCCGCCUGCUGACAGGUGGACUCAAAUAUG
............((((.....).)))............((((.((((.((........)).))))))))....((((((((((((....))))))))))))...... ( -29.90)
>consensus
GUAUCUUUUAUACCACUGCAUGCCACACUUUACUAAUCAGUUU_GGAUAAUGAGCUGUUUUCCAGGGCUUUAAUGGGUCCGCCGCCUGACAGGUGGACUCAAAUUUG
.....................(((.............((((((........))))))........))).....((((((((((........))))))))))...... (-22.24 = -22.80 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:18 2006