| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,738,454 – 11,738,548 |
| Length | 94 |
| Max. P | 0.570801 |
| Location | 11,738,454 – 11,738,548 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 81.31 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -15.48 |
| Energy contribution | -18.22 |
| Covariance contribution | 2.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11738454 94 + 22407834 CUCACCUUAUGUACGACUGCCAAUGUCCGAUGAUUGAUUGAUCGCA--CCCUCAAUCACCUGGUGGUGUCUUAAUAAAGUCUGCAUCGGUGGCAGU ...............(((((((....((((((...((((.(..(((--((.(((......))).)))))..).....))))..))))))))))))) ( -29.00) >DroSec_CAF1 197454 72 + 1 ----------------------AUGCCCGAUGAUUGAUUGAUCGCA--CCCUCAAUCACCUGGUGGUGCCUUAAUAAAGUCUGCAUCGGUGGCAGU ----------------------.(((((((((...((((.(..(((--((.(((......))).)))))..).....))))..)))))..)))).. ( -22.80) >DroSim_CAF1 198060 93 + 1 -UCACCUUAUGUACGACUGCCAAUGCCCGAUGAUUGAUUGAUCGCA--CCCUCAAUCACCUGGUGGUGCCUUAAUAAAGUCUGCAUCGGUGGCAGU -..............(((((((....((((((...((((.(..(((--((.(((......))).)))))..).....))))..))))))))))))) ( -30.50) >DroYak_CAF1 191716 95 + 1 -UCAUCUUUUGUACGACUGCCAAUGCCCCAUGAUUGAUUGAUCACCCCCCCUCAACCACCUGGUGGUGCCUCAACAAAGUCUGCAUCGGUGGCUUU -.............(.(..((.((((.....((((..((((.((((.((............)).))))..))))...)))).)))).))..))... ( -19.70) >consensus _UCACCUUAUGUACGACUGCCAAUGCCCGAUGAUUGAUUGAUCGCA__CCCUCAAUCACCUGGUGGUGCCUUAAUAAAGUCUGCAUCGGUGGCAGU ...............(((((((....((((((...((((((..........))))))(((....)))................))))))))))))) (-15.48 = -18.22 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:15 2006