| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,735,545 – 11,735,639 |
| Length | 94 |
| Max. P | 0.665789 |
| Location | 11,735,545 – 11,735,639 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.82 |
| Mean single sequence MFE | -24.49 |
| Consensus MFE | -6.16 |
| Energy contribution | -6.60 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11735545 94 + 22407834 ----G---AGGUCGGAUUU----UUUUGGG-----GCGCUUUGGCAUUAUGAAAAUGCUUUAAGCAGAAAAUUGGAUUUUUU-------CAUCUUGAAUGGAAAACAAAAC-AAGAAA-- ----(---(((((.(((((----(((....-----..((((.((((((.....))))))..)))))))))))).))))))..-------..(((((..((.....))...)-))))..-- ( -21.10) >DroSec_CAF1 195443 98 + 1 ----G---AGGUCGUGUUUU--UUUUUGGG-----GUGCUUUGGCAUUAUGAAAAUGCUUUAAGCAGAAAAUUGGAUUUUUU-------CAUCUUGAAUGGAAAACAAAAC-ACAAAAAA ----.---..((..((((((--((((..((-----((((((.((((((.....))))))..)))).(((((.......))))-------)))))..)).))))))))..))-........ ( -25.20) >DroWil_CAF1 117513 109 + 1 GCUAG---AGUGUGAGUGUAUGUGAGUGGGUAGAGCGGGGGAGAUAUUAUAAAAAUGCUUAAAGCAGAAAAUUGGAUUCUUCUU-----UUUUUUCUGUCGAGAACAACAC---CAACAA .....---..(((..((((.(((...(.(..((((.((((((((...........(((.....)))...........)))))))-----)...))))..).)..)))))))---..))). ( -22.45) >DroYak_CAF1 187900 95 + 1 ----G---CGGUCGGGUUU-----UUUGGG-----CUGCUUUGGCAUUAUGAAAAUGCUUUAAGCAGAAAAUUGGAUUUUUU-------CAUCUUGAAUGGAAAACAAAAC-ACCAAAAA ----.---......(((.(-----((((..-----((((((.((((((.....))))))..))))))..........(((((-------(((.....))))))))))))).-)))..... ( -24.70) >DroAna_CAF1 193033 105 + 1 ----UUAUGGGUGGGG-UG-----ACGGAG-----GUGCUGUGGCAUUAUGAAAAUGCUUAAAGCAGAAAAUUGGAUUUUUUUUCGCCCCAUCUUGAAUGGAAAACAAAGCUACAGGAAC ----....((((((((-((-----(..(((-----(((((..((((((.....))))))...))))...........))))..))))))))))).......................... ( -29.00) >consensus ____G___AGGUCGGGUUU_____UUUGGG_____GUGCUUUGGCAUUAUGAAAAUGCUUUAAGCAGAAAAUUGGAUUUUUU_______CAUCUUGAAUGGAAAACAAAAC_ACAAAAAA .....................................(((..((((((.....))))))...)))....................................................... ( -6.16 = -6.60 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:10 2006