Locus 4049

Sequence ID 2L_DroMel_CAF1
Location 11,729,070 – 11,729,160
Length 90
Max. P 0.591806
window6378

overview

Window 8

Location 11,729,070 – 11,729,160
Length 90
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 90.04
Mean single sequence MFE -23.40
Consensus MFE -17.52
Energy contribution -17.65
Covariance contribution 0.13
Combinations/Pair 1.04
Mean z-score -1.63
Structure conservation index 0.75
SVM decision value 0.12
SVM RNA-class probability 0.591806
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11729070 90 - 22407834
GCAGUCGUUUCAUUUCCCUUGGC----CCUGUCUGAGGCUUCGGAUUUUCCAGAUGAAUAUUAAUUUGGGAAACGUCUAGUUUACACAAGCAAU
((((.((((((...(((...(((----((.....).))))..)))....((((((........)))))))))))).)).((....))..))... ( -24.20)
>DroSec_CAF1 188487 90 - 1
GCAGUCGUUUCAUUUCCCUUGGC----CCUGUCUGAGGCUUCGGAUUUUCCAGAUGAAUAUUAAUUUGGGAAACGUCUAGUUUACACAAGCAGU
((((.((((((...(((...(((----((.....).))))..)))....((((((........)))))))))))).)).((....))..))... ( -24.20)
>DroSim_CAF1 180724 90 - 1
GCAGUCGUUUCAUUUCCCUUGGC----CCUGUCUGAGGCUUCGGAUUUUCCAGAUGAAUAUUAAUUUGGGAAACGUCUAGUUUACACAAGCAGU
((((.((((((...(((...(((----((.....).))))..)))....((((((........)))))))))))).)).((....))..))... ( -24.20)
>DroEre_CAF1 206344 94 - 1
GCAGUCGUUUCCUUCUCCUUGGCUUUUCCCCUCAGAGGCUUCUGAUUUUCCAGAUGCAUGCUAAUUUGGAAAACGCCUAGUUUACACAAGCCAU
...................((((((..........((((....(.((((((((((........))))))))))))))).........)))))). ( -21.01)
>consensus
GCAGUCGUUUCAUUUCCCUUGGC____CCUGUCUGAGGCUUCGGAUUUUCCAGAUGAAUAUUAAUUUGGGAAACGUCUAGUUUACACAAGCAAU
((((.((((((...................(((((......)))))...((((((........)))))))))))).)).((....))..))... (-17.52 = -17.65 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:00 2006