Locus 4046

Sequence ID 2L_DroMel_CAF1
Location 11,723,706 – 11,723,813
Length 107
Max. P 0.805062
window6373

overview

Window 3

Location 11,723,706 – 11,723,813
Length 107
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 79.23
Mean single sequence MFE -22.58
Consensus MFE -12.50
Energy contribution -13.22
Covariance contribution 0.72
Combinations/Pair 1.22
Mean z-score -2.05
Structure conservation index 0.55
SVM decision value 0.63
SVM RNA-class probability 0.805062
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11723706 107 - 22407834
AUUUUAAAAAAAGAAAACAAACAACAGUUUGUCAUAUUUAAGACAGGCAA-----GUGGUUUGGAA----UCAGAGGAGACUACUACUAUUUAUAGUUGAAUCGUUGCUUAAGAAA
.((((((..........(((((.((.(((((((........)))))))..-----)).)))))((.----(((.((....))...((((....))))))).)).....)))))).. ( -19.60)
>DroSec_CAF1 183101 112 - 1
AUUUUAAAUAAAAAAAACAAGCAAUAGUUUGUCCAAUUUAAACUAGGCAAGCAAUGUGGUUUGAAA----UGAGAAGAGACUACGACUAUUUAUGGUUGAUGCAUUUGUUAAGAAA
...............((((((((.((((((.((((.(((((((((.(.......).))))))))).----)).))..))))))((((((....)))))).)))..)))))...... ( -21.80)
>DroSim_CAF1 175324 112 - 1
AUUUUAAAUAAAACAAACAAACAAUAGUUUGUCAUAUUUAAAACAGGCAAGCAAUGUGGUUUGAAA----UGAGAAAAGACUACGACUAUUUAUAGUUGAUCCAUUUGCUAAGAAA
.(((((((((..((((((........))))))..)))))))))..((((((....(((((((....----.......)))))))(((((....)))))......))))))...... ( -23.70)
>DroEre_CAF1 200911 116 - 1
AUUUUAAAUAAAGCACACAAACAGUUGUUUGUCAUAUUUAAAACAGGCCAGCAACGUGGUCUCAGAAGUCUUAGAAGAGACUACGAUUAUUUAGUGGCGAUAAAUUCGUUAGGAGA
.(((((((((..(((.((((....)))).)))..)))))))))....((.....(((((((((.............))))))))).........((((((.....))))))))... ( -28.82)
>DroYak_CAF1 175026 112 - 1
AUUUAAAAUAGAGCGAACAAACAAUGGUUUGUCAUAUUUAAAAGAGGCAAGCAACGUGGUUUGAAA----UCAGAAGAGACUACGAUUAUUUAAAGGUAAUAAAUUUGUUAGGAAA
.(((.(((((..((((((........))))))..))))).)))..((((((...((((((((....----.......))))))))((((((....))))))...))))))...... ( -19.00)
>consensus
AUUUUAAAUAAAGCAAACAAACAAUAGUUUGUCAUAUUUAAAACAGGCAAGCAACGUGGUUUGAAA____UCAGAAGAGACUACGACUAUUUAUAGUUGAUACAUUUGUUAAGAAA
.(((((((((..((((((........))))))..)))))))))...........((((((((...............))))))))............................... (-12.50 = -13.22 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:55 2006