Locus 4044

Sequence ID 2L_DroMel_CAF1
Location 11,713,409 – 11,713,520
Length 111
Max. P 0.912099
window6370

overview

Window 0

Location 11,713,409 – 11,713,520
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.45
Mean single sequence MFE -29.16
Consensus MFE -14.04
Energy contribution -16.48
Covariance contribution 2.44
Combinations/Pair 1.05
Mean z-score -2.27
Structure conservation index 0.48
SVM decision value 1.08
SVM RNA-class probability 0.912099
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11713409 111 - 22407834
AUAU-GGCUAAAAUCGAAAGAGUAGGCCUGGGAAAUGCAGCAGCUGACUC--------AGUUGGCUAAGUGCCUGCCAGCGGAAGAAACCCAAAUAAAUAGCCAAAAACAAAGCCAAACA
...(-((((....((....))...(((.((((....((((((((((...)--------)))))((.....))))))...(....)...))))........)))........))))).... ( -29.40)
>DroSec_CAF1 180261 111 - 1
GUAU-GGCUAAAAUCGAAAGAGUAGGCCUGUGAAAUGCAGCAGCUGACUC--------GGUUGGCUAAGUGCCUGCCAGCGGAGGAAAACGGAAUAAAUAGCCGAAAACAAAGCCAAACA
((.(-((((....((....))...(((((((........))))(((.(((--------.((((((.........)))))).))).....)))........)))........))))).)). ( -34.50)
>DroSim_CAF1 172539 111 - 1
GUAU-GGCUAAAAUCGAAAGAGUAGGCCUGUGAAAUGCAGCAGCUGACUC--------AGUUGGCUAAGUGCCUGCCAGCGGAGGAAACCGGAAUAAAUAGCCGAAAACAAAGCCAAACA
((.(-((((....((....))...(((((((........))))(((.(((--------.((((((.........)))))).))).....)))........)))........))))).)). ( -32.70)
>DroYak_CAF1 172082 119 - 1
AUAU-GGCUAACAUCGAAAAAGUAGGCCUGGGAAAUGCAGCAGCUGACUCAGUUACUCAGUUGGCUAAGUGCCUGCCAGCGAAGGAAAACGGAAUAAAUAGCCGAAAACAAAGCCAAACA
...(-((((..(.(((.....(((((((((.......))).(((..(((.((...)).)))..)))....))))))...))).).....(((.........))).......))))).... ( -30.30)
>DroPer_CAF1 172378 88 - 1
GUAUUGGC-A-AGCC--AAAUGUAGACCUGAGAACUGCAGCAGCUGGCU-------------------GUGACCCCCAGCCA----AAGUGGAAUAAAUACC--AAAACAAAGAGAG---
((.((((.-.-(((.--...(((((.........)))))...)))((((-------------------(.(....)))))).----..............))--)).))........--- ( -18.90)
>consensus
GUAU_GGCUAAAAUCGAAAGAGUAGGCCUGGGAAAUGCAGCAGCUGACUC________AGUUGGCUAAGUGCCUGCCAGCGGAGGAAAACGGAAUAAAUAGCCGAAAACAAAGCCAAACA
.....(((((.........((((.((((((.......)))..))).)))).........((((((.........))))))..................)))))................. (-14.04 = -16.48 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:52 2006