Locus 4041

Sequence ID 2L_DroMel_CAF1
Location 11,704,638 – 11,704,745
Length 107
Max. P 0.602187
window6366

overview

Window 6

Location 11,704,638 – 11,704,745
Length 107
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 79.39
Mean single sequence MFE -23.48
Consensus MFE -14.52
Energy contribution -14.16
Covariance contribution -0.36
Combinations/Pair 1.32
Mean z-score -1.71
Structure conservation index 0.62
SVM decision value 0.14
SVM RNA-class probability 0.602187
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11704638 107 + 22407834
UUACCAUGUAAAAAAAAAUGCGAUGGCCGUUUAACUUUAGUUGAGAAAGGAACAUA-AGCUUGAUUCGGCAAGCCGAAGCU-ACAUA---CCUUAACUGUAAAAUUAUAUUU
...(((((((........))).))))((.((((((....))))))...))......-((((....((((....))))))))-.....---...................... ( -17.80)
>DroSec_CAF1 171395 106 + 1
UUACCAUGUAAA--AA--AGCGGUGGCCGAUCAACUUUAGUUGAAACAGGAACAUA-GGCUUGAUUCGGCAAGCCGAAACU-ACAUACUACCUUUACAGUAAAAUUAUAUUU
((((..((((((--..--...(((((((..(((((....)))))....))......-((((((......))))))......-.....))))))))))))))).......... ( -24.50)
>DroSim_CAF1 163646 108 + 1
UUACCAUGUAAAAAAA--AGCGGUAACCGUUCAACUUUAGUUGAAAAAGGAACAUA-GGCUUGAUUCGGCAAGCCGAAACU-ACAUACUACCUUUACAGUAAAAUUAUAUUU
((((..((((((....--...((((.((.((((((....))))))...))......-((((((......))))))......-......)))))))))))))).......... ( -24.21)
>DroEre_CAF1 188955 104 + 1
UUACCAUGUAAAAAA-----CGGUGGCUGUUCGACUUCAGUUGAAAAGAGAACAGACAGUUUUAUUCGGCAAGUCGAAGCUCACAUA---CCCUUGCAGUAGAAAUGCAUUA
......(((((....-----..((((((..(((((((..((((((...(((((.....))))).)))))))))))))))).)))...---...)))))(((....))).... ( -27.90)
>DroYak_CAF1 162940 103 + 1
UUACUAUGUAAAAAA-----CGGUGGCCGUUCAACUUCAGUUGAAACAAGAGCGGA-AGUCAUAUUCGGCAAGUCGAAGCUUACAUA---CCUUUGCAGUAGAUAUAAAUUU
...(((((((((...-----.((((((((((((((....))))))....((.(...-.))).....))))((((....))))...))---)))))))).))).......... ( -23.00)
>consensus
UUACCAUGUAAAAAAA___GCGGUGGCCGUUCAACUUUAGUUGAAAAAGGAACAUA_AGCUUGAUUCGGCAAGCCGAAGCU_ACAUA___CCUUUACAGUAAAAUUAUAUUU
((((..((((((..........((..((.((((((....))))))...)).))...........(((((....)))))..............)))))))))).......... (-14.52 = -14.16 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:48 2006