Locus 404

Sequence ID 2L_DroMel_CAF1
Location 1,230,064 – 1,230,179
Length 115
Max. P 0.964840
window641

overview

Window 1

Location 1,230,064 – 1,230,179
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.58
Mean single sequence MFE -35.72
Consensus MFE -29.96
Energy contribution -30.92
Covariance contribution 0.96
Combinations/Pair 1.03
Mean z-score -1.89
Structure conservation index 0.84
SVM decision value 1.57
SVM RNA-class probability 0.964840
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1230064 115 + 22407834
GAAAAUUGGUCGUUGGGUUUUUCGGGUGUUCGCCGUGCCAUCAAACACCGAAA--AAGUGUC---GGGGGCGGACAUCUAUGCAAAGCUAAACGUGCAGCAACUAACAACUAAAUUUCAU
((((.(((((.(((((.......(((((((((((((........)).((((..--.....))---)).))))))))))).(((...((.......)).))).))))).))))).)))).. ( -38.70)
>DroSec_CAF1 7419 115 + 1
GAAAAUUGGUCGUUGGGUUUUUCGGGUGUUCGCCGUGCCAUCAAACACCGAGG--AAGUGUC---GGGGGCGGACAUCUAUGCAAAGCUAAACGUGCAGCAACUAACAACUAAAUUUCAU
((((.(((((.(((((.......(((((((((((((........)).((((..--.....))---)).))))))))))).(((...((.......)).))).))))).))))).)))).. ( -38.60)
>DroSim_CAF1 3214 116 + 1
GAAAAUUGGUCGUUGGGUUUUUCGGGUGUUCGCCGUGCCAUCAAACACCGAGG--AAGUGUC--UGGGGGCGGACAUCUAUGCAAAGCUAAACGUGCUGCAACUAACAACUAAAUUUCAU
((((.(((((.(((((.......(((((((((((((........)).((.(((--.....))--).))))))))))))).((((..((.....))..)))).))))).))))).)))).. ( -40.80)
>DroEre_CAF1 3376 117 + 1
GAAAAUUGGCCGCUGGGUUUUUCGGGCGCUCGUCGUGCAUUUACACACAAAAAAAAAGUGUU---GGGGGCGGACAUCUAUGCAAAGCUAAACGUGCAGCAACUAACAACUAAAUUUCAU
((((.((((.((((.((....)).))))...((.(((......)))))..........((((---((..((((....)).((((..........))))))..)))))).)))).)))).. ( -25.40)
>DroYak_CAF1 3246 119 + 1
GAAAAUUGGUCGUUGGGUUUUUCGGGUGUUCCUCGUGCCAUCAAACACCAAAA-AAAGUGUUGUGGGGGGCGGACAUCUAUGCAAAGCUAAACGUGCAGCAACUAACAACUAAAUUUCAU
((((.(((((.(((((.......((((((.((.(.(.((((..(((((.....-...))))))))).).).)))))))).(((...((.......)).))).))))).))))).)))).. ( -35.10)
>consensus
GAAAAUUGGUCGUUGGGUUUUUCGGGUGUUCGCCGUGCCAUCAAACACCGAAA__AAGUGUC___GGGGGCGGACAUCUAUGCAAAGCUAAACGUGCAGCAACUAACAACUAAAUUUCAU
((((.(((((.(((((.......(((((((((((...((.....((((.........)))).....))))))))))))).(((...((.......)).))).))))).))))).)))).. (-29.96 = -30.92 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:08 2006