Locus 4035

Sequence ID 2L_DroMel_CAF1
Location 11,696,550 – 11,696,643
Length 93
Max. P 0.994239
window6357

overview

Window 7

Location 11,696,550 – 11,696,643
Length 93
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 77.83
Mean single sequence MFE -26.15
Consensus MFE -11.92
Energy contribution -13.57
Covariance contribution 1.64
Combinations/Pair 1.33
Mean z-score -3.64
Structure conservation index 0.46
SVM decision value 2.46
SVM RNA-class probability 0.994239
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11696550 93 + 22407834
UCCGCAUU-----UCUUGGCCACAUCAUGGCACAAGAAAUUUCAUUAGCCUAACGAGUUGUUUGCUCGGCAGGCCGAGGUAAAAACUUUGUCAUCUCU
.....(((-----(((((((((.....)))).)))))))).......((((..(((((.....)))))..))))((((((....))))))........ ( -30.80)
>DroPse_CAF1 148505 88 + 1
CCCCCCUUGCCGCCCCUUGCCCCACCGCCUUUGCGGCAAUUUCAUUAUCCUAACGAGUUGUUUACUCGAC----------AAAAACUUUGUCAUCUCC
......(((((((.....((......))....)))))))...............((((.....))))(((----------((.....)))))...... ( -19.90)
>DroSim_CAF1 155627 93 + 1
UCCGCAUU-----UCUUGGCCACAUCAUGGCACAAGAAAUUUCAUUAGCCUAACGAGUUGUUUGCUCGGCAGGCCGAGGUAAAAACUUUGUCAUCUCU
.....(((-----(((((((((.....)))).)))))))).......((((..(((((.....)))))..))))((((((....))))))........ ( -30.80)
>DroEre_CAF1 181105 93 + 1
UCCGCAUU-----UCUUGGCCACAUCAUGGCACAAGAAAUUUCAUUAGCCUAACGAGUUGUUUGCUCGGCAGGUCGAAGUAAAAACUUUGUCAUCUCU
.....(((-----(((((((((.....)))).)))))))).......((((..(((((.....)))))..))))((((((....))))))........ ( -28.90)
>DroYak_CAF1 154775 93 + 1
UCCGCAUU-----UCUUGGCCACAUCAUGGCACAAGAAAUUUCAUUAGCCUAACGAGUUGUUUGCUCGGCAGGUCGAGGUAAAAACUUUGUCAUCUCU
.....(((-----(((((((((.....)))).)))))))).......((((..(((((.....)))))..))))((((((....))))))........ ( -28.60)
>DroPer_CAF1 149195 85 + 1
---CCCUUGCCACCCUUUGCCCCGCCGCCUUUGCGGCAAUUUCAUUAUCCUAACGAGUUGUUUACUCGAC----------AAAAACUUUGUCAUCUCC
---....................(((((....))))).................((((.....))))(((----------((.....)))))...... ( -17.90)
>consensus
UCCGCAUU_____UCUUGGCCACAUCAUGGCACAAGAAAUUUCAUUAGCCUAACGAGUUGUUUGCUCGGCAGG_CGAGGUAAAAACUUUGUCAUCUCU
.............(((((((((.....)))).)))))..........((((..(((((.....)))))..))))........................ (-11.92 = -13.57 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:39 2006