Locus 403

Sequence ID 2L_DroMel_CAF1
Location 1,229,278 – 1,229,377
Length 99
Max. P 0.507742
window640

overview

Window 0

Location 1,229,278 – 1,229,377
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 80.74
Mean single sequence MFE -32.47
Consensus MFE -19.78
Energy contribution -20.87
Covariance contribution 1.09
Combinations/Pair 1.34
Mean z-score -1.57
Structure conservation index 0.61
SVM decision value -0.05
SVM RNA-class probability 0.507742
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1229278 99 + 22407834
CAUUACCUUGUUUGUAUCCAUGUUCAUGCACCUUUGUGUUGAGGUGCCAUUGGGGCGCCUCGAGAUGGAACUGCUAAAAAGGUGUCAAAAGAAAGAGGA
.....((((.((((...((........(((..((..(.((((((((((.....)))))))))).)..))..)))......))...)))).....)))). ( -32.84)
>DroPse_CAF1 1511 98 + 1
UAUAACGUUGUGCGUCUCCACAUUGAUGUAUCUGUUCGUUGAGGCGCCGGUGGCUCGACUCGAGACCCAAUUGCUGAGGAGGCGUCCAAGGCAGGAGA-
.....(.(((..(((((((.((..((((..(((....((((((.((....)).))))))...)))..).)))..)).)))))))..))).).......- ( -30.80)
>DroSec_CAF1 6711 99 + 1
CAUUACCUUGUUCGCAUCCAUGUUCAUGCACCUUUGUGUUGAGGUGCCAUUGGGGCGUUUCGAGAUGGAACUCCUGAAAAGGUGCCAAAAGAAAGAGGA
.....((((.((((((....)))....((((((((((.((((..((((.....))))..)))).))((....))...)))))))).....))).)))). ( -31.30)
>DroSim_CAF1 2501 99 + 1
CAUUACCUUGUUCGUAUCCAUGUUCAUGCACCUGUGUGUUGAGGUGCCAUUGGGGAGCCUCGAGAUGGAACUGCUGAAAAGGUGUCAAAAGAAAGAGGA
.....((((.(((....((...((((.(((..(.(((.(((((((.((.....)).))))))).))).)..)))))))..))........))).)))). ( -28.20)
>DroEre_CAF1 2607 99 + 1
CAUCACCUUGUUCGUAUCCCUAUUCAUGCACCUUUUUGUUGAGGUGCCAUUGGGGCGCCUCGAGAUGGAGCUGCUGCAAAGGCGUCCAAGGAAAGCGGA
.....(((((..((....(((...((.(((.(((..(.((((((((((.....)))))))))).)..))).)))))...)))))..)))))........ ( -37.00)
>DroYak_CAF1 2474 99 + 1
CAUUACCUUGUUCGUAUCCUUGUUUAUGCACCUUUUUGUGGAGGUGCCAUUGGGACGCCUUGAGAUGGAGCUGCUAAAAAGGCGCCAGAAGAAGGUGGA
..(((((((.(((..............((((((((....)))))))).....((.((((((....(((.....)))..)))))))).))).))))))). ( -34.70)
>consensus
CAUUACCUUGUUCGUAUCCAUGUUCAUGCACCUUUGUGUUGAGGUGCCAUUGGGGCGCCUCGAGAUGGAACUGCUGAAAAGGCGUCAAAAGAAAGAGGA
.....((((.(((....((...((((.(((..((..(.((((((((((.....)))))))))).)..))..)))))))..))........))).)))). (-19.78 = -20.87 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:06 2006