Locus 4029

Sequence ID 2L_DroMel_CAF1
Location 11,686,183 – 11,686,273
Length 90
Max. P 0.904213
window6349

overview

Window 9

Location 11,686,183 – 11,686,273
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 99.26
Mean single sequence MFE -22.39
Consensus MFE -22.06
Energy contribution -22.39
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.99
SVM decision value 1.03
SVM RNA-class probability 0.904213
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11686183 90 - 22407834
GGCCACAUGUGCGGGCUGACAGCUACGCAAAUAGGAGCGAACCGCGUAGAACAAAAACCGAAAACAGAAAAAAUUGUGAAAAUAGUGGUG
.(((((.(((.(((........((((((.....((......))))))))........)))...)))........(((....)))))))). ( -23.19)
>DroSec_CAF1 147443 90 - 1
GGCCACAUGUGCGGGCUGACAGCUACGCAAAUAGGAGCGAACCGCGUAGAACAAAAACCGAAACCAGAAAAAAUUGUGAAAAUAGUGGUG
.(((((.....(((........((((((.....((......))))))))........)))..............(((....)))))))). ( -20.79)
>DroSim_CAF1 145271 90 - 1
GGCCACAUGUGCGGGCUGACAGCUACGCAAAUAGGAGCGAACCGCGUAGAACAAAAACCGAAAACAGAAAAAAUUGUGAAAAUAGUGGUG
.(((((.(((.(((........((((((.....((......))))))))........)))...)))........(((....)))))))). ( -23.19)
>consensus
GGCCACAUGUGCGGGCUGACAGCUACGCAAAUAGGAGCGAACCGCGUAGAACAAAAACCGAAAACAGAAAAAAUUGUGAAAAUAGUGGUG
.(((((.(((.(((........((((((.....((......))))))))........)))...)))........(((....)))))))). (-22.06 = -22.39 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:31 2006