Locus 4028

Sequence ID 2L_DroMel_CAF1
Location 11,683,822 – 11,683,912
Length 90
Max. P 0.991243
window6348

overview

Window 8

Location 11,683,822 – 11,683,912
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 94.07
Mean single sequence MFE -25.22
Consensus MFE -22.60
Energy contribution -23.43
Covariance contribution 0.83
Combinations/Pair 1.11
Mean z-score -2.18
Structure conservation index 0.90
SVM decision value 2.26
SVM RNA-class probability 0.991243
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11683822 90 - 22407834
ACUUCAUCAAUUCUAAUCAAGCCAGAGUCCUGGGCAAAUCUCCGCUGAAAAUUAACCGCAGCAAACUGCCAGCCAGGGACUUGGGCCAUG
....................(((.(((((((.(((...((......)).........((((....))))..))).))))))).))).... ( -26.70)
>DroSec_CAF1 145075 90 - 1
ACUUCAUCAAUUCUAAUCAAGCCAGAGUCCUGGGCAAAUCUCCGCUGAAAAUUAACCGCAGCAAACUGCCAGCCAGGGACUUGGGUCAUG
....................(((.(((((((.(((...((......)).........((((....))))..))).))))))).))).... ( -24.70)
>DroSim_CAF1 142902 90 - 1
ACUUCAUCAAUUCUAAUCAAGCCAGAGUCCUGGGCAAAUCUCCGCUGAAAAUUAACCGCAGCAAACUGCCAGCCAGGGACUUGGGCCAUG
....................(((.(((((((.(((...((......)).........((((....))))..))).))))))).))).... ( -26.70)
>DroEre_CAF1 168387 89 - 1
ACUUCAUCAAUUCUAAUCAAGCCGGAGUCCCG-GCAAAUCUCCGCUGAAAAUUAACCGCAGCAAACAGCCAGCCAGGGACUUGGGCCAUG
....................(((.((((((((-((........((((...........)))).........))).))))))).))).... ( -27.33)
>DroYak_CAF1 141218 90 - 1
ACUUCAUCAAUUCUAAUCAAGCCGGAGUCCUGGGCAAAUCUCCGCUGAAAAUUAACCGCAGCAAACUGCCAGCCAGGGACUUGGGCCAUG
....................(((.(((((((.(((...((......)).........((((....))))..))).))))))).))).... ( -28.80)
>DroAna_CAF1 150965 83 - 1
ACUUCAUCAAUUCUAAUCAAGCCGGAGGCCCGAGCAAAUCUCCGCUGAAAAUUAACCGCAGAAAACUGCCAGCCAGGGACUUG-------
.................((((((((((((....))....))))((((..........((((....))))))))...)).))))------- ( -17.10)
>consensus
ACUUCAUCAAUUCUAAUCAAGCCAGAGUCCUGGGCAAAUCUCCGCUGAAAAUUAACCGCAGCAAACUGCCAGCCAGGGACUUGGGCCAUG
....................(((.(((((((.(((...((......)).........((((....))))..))).))))))).))).... (-22.60 = -23.43 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:30 2006