| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,681,944 – 11,682,037 |
| Length | 93 |
| Max. P | 0.944851 |
| Location | 11,681,944 – 11,682,037 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 73.53 |
| Mean single sequence MFE | -29.87 |
| Consensus MFE | -13.79 |
| Energy contribution | -13.52 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.46 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.944851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11681944 93 + 22407834 AG------------------GCAACGACUUUAA-UAUGUAUUAUUUCAACUGUAUAAGGCAAGUCAGUCAGUUAUUGGCAUGGCUGAUUGGCCAACUGGUCGGCUGCGUAAU ..------------------(((.(((((....-..(((((..........))))).(((.(((((((((((.....)).))))))))).)))....)))))..)))..... ( -28.10) >DroSec_CAF1 143147 111 + 1 AGUAAUAUUUACUACGCAUGCCAACCAUUUUAA-UAUGUAUUUUUUCCAGUGUAUAAGCAAAGUCCGUCAGUUAUUGGCAUGGCUGAUUGGCCAACUGGUCGGCUGCGUAUU ............((((((.(((.((((......-((((((((......))))))))......(((.(((((((((....))))))))).)))....)))).))))))))).. ( -30.60) >DroSim_CAF1 140973 111 + 1 AGUAAUAUUUACUACGCAUGUCAACCAUUUUAA-UAUGUAUUUUUUCCAGUGUAUAAGCAAAGUCCGUCAGUUAUUGGCAUGGCUGAUUGGCCAACUGGUCGGCUGCGUAAU ............((((((.(((.((((......-((((((((......))))))))......(((.(((((((((....))))))))).)))....)))).))))))))).. ( -28.10) >DroEre_CAF1 166542 111 + 1 UGUAGCAUUUCCAGCGCACGCCAAGCAAUUCCA-AAUGAAUUUUUUCAAGUGCAGCAGCCAAGUCAGUCAGUUAUUGGCAUGGCUGAUUGGCCAACUGGUCGGCUGCGUAAU ....((.......))((((...(((.(((((..-...))))).)))...)))).((((((.(((((((((((.....)).)))))))))((((....))))))))))..... ( -39.10) >DroYak_CAF1 139239 112 + 1 AGUAACUUUUAUUAUGCAUGCCAACCAAUUCCAUAAUUAUUUUUUUCAAGUGUAACAGCCAAGUCACUCAGUUAUUGGCAUGGCUGAUUGGCCAACUGGUCGGCUGCGUAAU ..........((((((((.(((.................................((((((.((((.........)))).))))))...((((....))))))))))))))) ( -32.30) >DroAna_CAF1 148930 80 + 1 AGUAA-----------------------UCUCC-----CAUGUCUUCAAGUGUAAUAACCAAGU----CAGUUAGUGGCAUGGCUGAUUGGCCAACCGGUCGGCUACGCAAU .....-----------------------.....-----...........(((((.....((.((----((.....)))).))(((((((((....))))))))))))))... ( -21.00) >consensus AGUAA_AUUUACUACGCAUGCCAACCAAUUUAA_UAUGUAUUUUUUCAAGUGUAUAAGCCAAGUCAGUCAGUUAUUGGCAUGGCUGAUUGGCCAACUGGUCGGCUGCGUAAU .............................................................................((..((((((((((....))))))))))..))... (-13.79 = -13.52 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:29 2006