Locus 4026

Sequence ID 2L_DroMel_CAF1
Location 11,679,781 – 11,679,886
Length 105
Max. P 0.920623
window6346

overview

Window 6

Location 11,679,781 – 11,679,886
Length 105
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 78.28
Mean single sequence MFE -31.04
Consensus MFE -23.80
Energy contribution -25.12
Covariance contribution 1.32
Combinations/Pair 1.13
Mean z-score -1.80
Structure conservation index 0.77
SVM decision value 1.14
SVM RNA-class probability 0.920623
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11679781 105 + 22407834
---UAGCAGGACUUUAAAUGCAGUUGCAGCUGCAGCUGCAGCUGGCAAGCAAACACUUUGGCAAUUUGACUUUUGGUCAGUAGUGUCAACAGCAUCAC------ACA----CACACAC
---..((...........((((((((((((....))))))))).)))..........((((((..(((((.....)))))...))))))..)).....------...----....... ( -32.30)
>DroSim_CAF1 138798 111 + 1
---UAGCAGGACUUUAAAUGCAGUUGCAGCUGCAGCUGCAGCUGGCAAGCAAACACUUUGGCAAUUUGACUUUUGGUCAGUAGUGUCAACAGCAUCACCCACACACA----CACACAC
---.....((........(((((((((....)))))))))(((((....).......((((((..(((((.....)))))...)))))))))).....)).......----....... ( -33.20)
>DroEre_CAF1 164155 107 + 1
---UGGCAGGACCUUAAAUGCAGUUGCAGCUGCAGCUGCAGCUGGCAAGCAAACACUUUGGCAAUUUGACUUUUGGUCAGCAGUGUCAACAGCAUCACACACA--------CACACAC
---..((...........((((((((((((....))))))))).)))..........((((((..(((((.....)))))...))))))..))..........--------....... ( -31.40)
>DroWil_CAF1 50676 118 + 1
AUGUGGCAGAGCUUCUGUUGCAGCUGCAAGUUGAACCAAAGCUGGCAAGCAAACACUUUGGCAAUUUGACUUUUGGUCAGCAGUGUCAACAGCAUCAUCAACACACACACACACUCAC
.((((...((....((((((..(((((((((((..((((((.((.........))))))))))))))(((.....))).)))))..)))))).....))..))))............. ( -32.20)
>DroAna_CAF1 146203 103 + 1
---UGGCAAGGAUUG----GGGGUUGCAACUUGAAAUGCAGCUGGGAAGCAAACACUUUGGCAAUUUGACUUUUGGUCAACAGUGUCAACAACAUUGCACUGGCACA----CAC----
---..((.((.....----..(((((((........))))))).....((((.....((((((..(((((.....)))))...)))))).....)))).)).))...----...---- ( -26.10)
>consensus
___UGGCAGGACUUUAAAUGCAGUUGCAGCUGCAGCUGCAGCUGGCAAGCAAACACUUUGGCAAUUUGACUUUUGGUCAGCAGUGUCAACAGCAUCACACACACACA____CACACAC
.....((.............((((((((((....)))))))))).............((((((..(((((.....)))))...))))))..))......................... (-23.80 = -25.12 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:28 2006