| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,670,743 – 11,670,852 |
| Length | 109 |
| Max. P | 0.992093 |
| Location | 11,670,743 – 11,670,852 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.10 |
| Mean single sequence MFE | -35.23 |
| Consensus MFE | -18.33 |
| Energy contribution | -20.44 |
| Covariance contribution | 2.11 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.52 |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.992093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11670743 109 + 22407834 AGUGAUUUGUGGGCAUGAAAAAGGCUUUUCUAUCGGAAACUCGAAGGUGGAUGGAAAAA-GCGAUUUCGAGCAGGAAG--------AACUGCAGACGAGCUUU-UGCUGCAAGUUGCAG- .(..(((((..(.((....((((((((((((((((....).(....)..))))).))))-))...((((.((((....--------..))))...))))))))-)))..)))))..)..- ( -33.30) >DroSec_CAF1 131958 110 + 1 AGUGAUUUGUGGGCAUGAAAAAGGCUUUUCCAUCGGAAACUCGAAGGUGGAUGGAAAAACCCGAUUUCGAGCAGGAAG--------AACUGCAGACGAGCCUU-UGCUGCAAGUUGCAG- .(..((((((((((.(((((..((.((((((((((....).(....)..)))))))))..))..))))).((((....--------..))))......)))).-....))))))..)..- ( -38.00) >DroSim_CAF1 129837 110 + 1 AUUGAUUUGUGGGCAUGAAAAAGGCUUUUCCAUCGGAAACUCGAAGGUGGAUGGAAAGAACCGAUUUCGAGCAGGAAG--------AACUGCAGACGAGUCUU-UGCUGCAAGUUGCAG- ...(((((((.....(((((..((.((((((((((....).(....)..)))))))))..))..))))).((((....--------..))))..)))))))..-..((((.....))))- ( -33.70) >DroEre_CAF1 153429 103 + 1 AGUGAUUUGUGGGCAGGAAAAAGGCUUUUCCAUCGAAAACACGAAGGUGGU-----AAA-GCGGU-UCAGGCAGGAGG--------AACUGCAGACGAGCCAU-UGCUGCAAGUUGCAG- .(..(((((..(.(((.......(((((.(((((...........))))).-----)))-))(((-((..((((....--------..))))....))))).)-)))..)))))..)..- ( -38.80) >DroYak_CAF1 127781 104 + 1 AGUGAUUUGUGGGCACGAAAAAGUCUUUUCUAUCGGAAACAUGAAGGUGGA-----AUA-GCGGUUUCGGGCAGGAAG--------AACUGCAGACGAGCCAA-UGCUGCAAGUUGCAG- .(..(((((..(.((.......(.((.((((((((....).....))))))-----).)-))((((.((.((((....--------..))))...))))))..-)))..)))))..)..- ( -33.30) >DroAna_CAF1 137571 108 + 1 AGAGAUUUGUGGACAAAAAAAUGACUCAC----------CUGGUAGGGGGUUCUA-CCU-GCGGUUAGAAGCAGGAAACCGUCAGGCUGUGGAGAAGGGCUGCUGGCUGCAGGCUGCAGG ......(((..(..........(((((.(----------(.....)))))))...-(((-((((((((..((.(....).))..((((.(.....).)))).))))))))))))..))). ( -34.30) >consensus AGUGAUUUGUGGGCAUGAAAAAGGCUUUUCCAUCGGAAACUCGAAGGUGGAUGGA_AAA_GCGAUUUCGAGCAGGAAG________AACUGCAGACGAGCCUU_UGCUGCAAGUUGCAG_ .((((((((..(.((.....(((((((.((((((...........))))))...................((((..............))))....))))))).)))..))))))))... (-18.33 = -20.44 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:22 2006