Locus 4021

Sequence ID 2L_DroMel_CAF1
Location 11,669,998 – 11,670,090
Length 92
Max. P 0.914299
window6339

overview

Window 9

Location 11,669,998 – 11,670,090
Length 92
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.45
Mean single sequence MFE -30.03
Consensus MFE -23.28
Energy contribution -24.70
Covariance contribution 1.42
Combinations/Pair 1.12
Mean z-score -2.10
Structure conservation index 0.78
SVM decision value 1.09
SVM RNA-class probability 0.914299
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11669998 92 + 22407834
-------------------CAUUUUCCCCAGCCCCAU--------UGCAUGUGCAUAUUUUGUGGAGCACUUCGUCGCAAAUUAAGUCGGCGCAGCGC-AGCAAAUGCUGCAUAUGCAUG
-------------------..................--------((((((((((...(((((...((.((.((((((.......).))))).)).))-.)))))...)))))))))).. ( -29.20)
>DroPse_CAF1 121799 112 + 1
CUCAACAUCUGCUUCUGCCUCUUGCCUCCUGCCUCGU--------GCCUCCUGCAUAUUUUGUAGAGCACUUCGUCGCAAAUUAUGUCGGCGCAGCGAAAGCAAAUGUUGCAUAUGCAUG
..((((((.(((((..((.....)).((((((...((--------((...(((((.....))))).))))...((((((.....)).)))))))).))))))).)))))).......... ( -31.30)
>DroSim_CAF1 129083 92 + 1
-------------------CAUUUUCCCCAGCCCCAU--------UGCAUGUGCAUAUUUUGUGGAGCACUUCGUCGCAAAUUAUGUCGGCGCAGCGC-AGCAAAUGCUGCAUAUGCAUG
-------------------..................--------((((((((((...(((((...((.((.(((((((.....)).))))).)).))-.)))))...)))))))))).. ( -30.40)
>DroEre_CAF1 152665 92 + 1
-------------------CAUUUUCCCCAGACCCAU--------UGCAUGUGCAUAUUUUGCGGAGCACUUCGGCGCAAAUUAUGUCGGCGCUGCGC-AGCAAAUGCUGCAUAUGCAUG
-------------------..................--------(((((((((((((((((((.(((...((((((.......)))))).))).)))-)..))))).)))))))))).. ( -31.20)
>DroYak_CAF1 127011 92 + 1
-------------------CAUUUUCCCCAGCCCCAU--------UGCAUGUGCAUAUUUUGUGGAGCACUUCGUCGCAAAUUAUGUCGGCGCAGCGC-AGCAAACGCUGCAUAUGCAUG
-------------------..................--------((((((((((...(((((...((.((.(((((((.....)).))))).)).))-.)))))...)))))))))).. ( -29.70)
>DroAna_CAF1 136989 101 + 1
-------------------CGUUUGCCACGCCCACAUCUUUGCCCUGUUUGUGCAUAUUUUGUAGAGCACUUCGUUGCAAAUUAUGUCGGCGCAGCGAAAGCAAAUGCUGCAUAUGCAUG
-------------------....(((...(((.((((.(((((..((...((((............))))..))..)))))..)))).)))((((((........))))))....))).. ( -28.40)
>consensus
___________________CAUUUUCCCCAGCCCCAU________UGCAUGUGCAUAUUUUGUGGAGCACUUCGUCGCAAAUUAUGUCGGCGCAGCGC_AGCAAAUGCUGCAUAUGCAUG
.............................................((((((((((...(((((...((.((.(((((((.....)).))))).)).))..)))))...)))))))))).. (-23.28 = -24.70 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:21 2006