| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,219,526 – 1,219,621 |
| Length | 95 |
| Max. P | 0.915932 |
| Location | 1,219,526 – 1,219,621 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.78 |
| Mean single sequence MFE | -35.83 |
| Consensus MFE | -18.01 |
| Energy contribution | -19.77 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.915932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1219526 95 - 22407834 --GUAUAUCCA------CAUCGGUUGCCA----UCAACCGACCUCGAAGAGCAGGCAAGGAUUUGGCCUCUGCUCCCGUGAGGAGGAGGCGAACCUCCGCCAGGCAA --((...(((.------..(((((((...----.)))))))(((((..((((((...(((......)))))))))...))))).)))((((......))))..)).. ( -38.00) >DroSec_CAF1 4368 92 - 1 --GC---UCCA------CAUUGGUUGCCA----UCAACCAACCUCGAAGAGCAGGCAAGGAUUUGGCCUCUGCUCCCUUGAGCAGGAGGCGCACCUCCGCCAGGCAA --((---((..------..(((((((...----.))))))).......)))).(((..(((..((((((((((((....))))).))))).))..))))))...... ( -36.80) >DroSim_CAF1 165 92 - 1 --AC---UCCA------CAUUGGUUGCCA----UCCACCAACCUCGAAGAGCAGGCAAGGAUUUGGCCUCUGCUCCCUUGAGCAGGAGGCGCACCUCCGCCAGGCAA --.(---((..------....(((((...----.....))))).....)))..(((..(((..((((((((((((....))))).))))).))..))))))...... ( -32.20) >DroEre_CAF1 305 92 - 1 --GC---UCCA------CAUAUGUGACUU----UCGACUAACCUCGAAGAGCUGGCAAGGAUUUGGCCUCUGCUCCCUUGAGCAGGCGGCGCACCUCCGCCAGGCAA --((---((((------(....)))...(----((((......)))))))))((((..(((..((((((((((((....))))))).))).))..)))))))..... ( -36.10) >DroYak_CAF1 162 92 - 1 --GC---UACA------CAUUAGUUGCCA----ACGACUAACCUCGAAGAGCAGGCAAGGAUUUGGCCUCUGCUCCCUGGAGGAGCAGGCGAACCUCCGCCAGGCAA --((---(...------..(((((((...----.)))))))((((.(.((((((...(((......)))))))))..).))))))).((((......))))...... ( -32.90) >DroMoj_CAF1 8611 104 - 1 GAAC---UCCAGCUGAGCAUCGAUUCACCUCCUCUCGCUUACCUUGCAACGCUGGCAGAGCGCGCCGCUCGGCCGCCUGCAGCAGGAGGCCCACCUCUGUGGCGCAG ...(---(((.(((((((..................)))))....))...((((.(((.(((.(((....))))))))))))).))))((((((....)))).)).. ( -38.97) >consensus __GC___UCCA______CAUUGGUUGCCA____UCAACCAACCUCGAAGAGCAGGCAAGGAUUUGGCCUCUGCUCCCUUGAGCAGGAGGCGCACCUCCGCCAGGCAA .......................(((((..............((((..((((((...(((......)))))))))...))))..(((((....)))))....))))) (-18.01 = -19.77 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:05 2006