| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,668,262 – 11,668,355 |
| Length | 93 |
| Max. P | 0.699226 |
| Location | 11,668,262 – 11,668,355 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.18 |
| Mean single sequence MFE | -12.93 |
| Consensus MFE | -5.32 |
| Energy contribution | -4.88 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699226 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11668262 93 + 22407834 AACA---------CACAUUUCGAUAAAUUCAAUACAAUU-UUUUUCGCCCAUGUGGACUCAUAAAAUACUAUACACUAAACACUCAAUACACAGUGUAAUUAA ....---------(((((..(((.(((((......))))-)...)))...)))))................((((((...............))))))..... ( -10.76) >DroSec_CAF1 129509 92 + 1 AACA---------CAUAUUUCGAUAAAUUCAAUACAGUU-U-UUCCGCCCACGUGGGCGCAUUAAAUAAAAUACACUACGCACUCAAUACACAGUGUAAUUAA .(((---------(.......((.(((((......))))-)-.))(((((....)))))..................................))))...... ( -14.10) >DroSim_CAF1 127409 92 + 1 AACA---------CACAUUUCGAUAAAUUCAAUACAGUU-U-UUCCGCCCACGUGGGCGCAUAAAAUACAAUACACUACGCACUCAAUACACAGUGUAAUUAA ...(---------(((.....((.....))......(((-(-(..(((((....)))))...)))))..........................))))...... ( -15.10) >DroEre_CAF1 150996 95 + 1 AACACCACAUUUCGAUAUUUCGAUGGAUUCAAUUCAAUU-U-UUGCACACGCGUGGGCUCAUAAAAUAC------CCAAACACUCAGUACACUGUGUAAUUAA ....(((....((((....))))))).............-.-((((((..(..((((...........)------)))..)....((....)))))))).... ( -14.70) >DroYak_CAF1 125323 87 + 1 AGCA---------AAUAUUUCCAUAAAUUCAAUUCAAUUCU-UUCCACCGGAGUGGACUCAUAAAAUAC------CCAAACACUCAAUACACUGAGUAAUUAA ....---------............................-.(((((....)))))............------......(((((......)))))...... ( -10.00) >consensus AACA_________CAUAUUUCGAUAAAUUCAAUACAAUU_U_UUCCGCCCACGUGGGCUCAUAAAAUAC_AUACACUAAACACUCAAUACACAGUGUAAUUAA ...........................................(((((....)))))......................((((..........))))...... ( -5.32 = -4.88 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:15 2006