Locus 4011

Sequence ID 2L_DroMel_CAF1
Location 11,652,871 – 11,652,976
Length 105
Max. P 0.552088
window6322

overview

Window 2

Location 11,652,871 – 11,652,976
Length 105
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 82.59
Mean single sequence MFE -36.73
Consensus MFE -21.83
Energy contribution -21.50
Covariance contribution -0.33
Combinations/Pair 1.40
Mean z-score -2.17
Structure conservation index 0.59
SVM decision value 0.04
SVM RNA-class probability 0.552088
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11652871 105 - 22407834
UGGACAGCUUCGUUGUUGAAACACCACCCGCAUCAAUGCGAUCUUUUUCAUUGAGAACUUCGGCCUGCUUCUUGGCCACGGCCAUCUCUUCAUUGAUGGC-CUUGG
..((((((...))))))(((........((((....)))).((((.......))))..)))((((........))))..(((((((........))))))-).... ( -31.60)
>DroSec_CAF1 106266 106 - 1
UGGACAGCUUCGUUGUUGAGACACCACCCGCAUCAAUGCGGUUUUUUUCACUGAGAGCUUCGGCCUGCUUCUUGGCCACGGCCAUCUCUUCAUUGAUGGCCCUUGG
..((((((...))))))((((......(((((....)))))....)))).(..((......((((........))))..(((((((........)))))))))..) ( -35.70)
>DroSim_CAF1 110937 105 - 1
UGGACAGCUUCGUUGUUGAGACAGCACCCGCAUCAAUGCGGUUUUUUUCACUGAGAGCUUCGGCCUGCUUCUUGGCCACGGCCAUCUCUUCAUUGAUGGC-CUUGG
..((.(((((.(((((....)))))..(((((....))))).............)))))))((((........))))..(((((((........))))))-).... ( -38.40)
>DroEre_CAF1 135831 105 - 1
UGGAGAGUUCCGUCCUGGAGACUUUACCCGCAUCAAUGCGGUCUUUUUCGUUGAGGGCUGCGGCCUGCUUCUUGGCUACGGCCAUCUCUUCAUUGAUGGC-CUUGG
.((((((((((.....))).))))).)).........(((((((((......)))))))))((((........))))..(((((((........))))))-).... ( -38.40)
>DroYak_CAF1 109947 105 - 1
GGGAGAGUUUCGUCUUUGAGACACCACCCGCAUCAAUGCGGUCUUUUUCAUUGAGUGCAGCGGCCUGCUUCUUGGCCACGGCCAUCUCUUCAUUGAUGGC-CUUGG
(((.(.((((((....)))))).)..)))(((((((((..(....)..)))))).))).(.((((........)))).)(((((((........))))))-).... ( -40.20)
>DroAna_CAF1 119785 105 - 1
UUGAAACGUUAACCUUCGAUUCCCCGCCUGCAUCGAUGCGGGCCUUUUCGUGGAUGGCAGCCGCCUGUUUCUUGGCCAGAGACAUUUCCUCGUUGAUGGC-CUUUG
..(((((.....((..(((......(((((((....)))))))....))).))..(((....))).)))))..(((((..(((........)))..))))-).... ( -36.10)
>consensus
UGGACAGCUUCGUCGUUGAGACACCACCCGCAUCAAUGCGGUCUUUUUCAUUGAGAGCUGCGGCCUGCUUCUUGGCCACGGCCAUCUCUUCAUUGAUGGC_CUUGG
........(((.((..(((((......(((((....)))))....)))))..)))))....((((........))))...((((((........))))))...... (-21.83 = -21.50 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:05 2006