Locus 4006

Sequence ID 2L_DroMel_CAF1
Location 11,640,616 – 11,640,707
Length 91
Max. P 0.551903
window6315

overview

Window 5

Location 11,640,616 – 11,640,707
Length 91
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 86.81
Mean single sequence MFE -32.77
Consensus MFE -21.70
Energy contribution -22.77
Covariance contribution 1.06
Combinations/Pair 1.10
Mean z-score -1.66
Structure conservation index 0.66
SVM decision value 0.04
SVM RNA-class probability 0.551903
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11640616 91 - 22407834
GCUCCUGGCUUGUUGCUAGUUGUUGGUCUCAUGGCUGGAUGGCUUUGGUUUCGAGAAAUCAACGCGCACA--------CUCAUG--UGUUUGGGCCGUUCU
((..(((((.....)))))..)).((((....))))(((((((((((((((....)))))))((.(((((--------....))--))).)))))))))). ( -29.30)
>DroSec_CAF1 93933 91 - 1
GCUCCUGGCUUGUUGCUAGUUGUUGGUCUUAUGGCUGGAUGGCUUUGGUUUCGAGAAAUCAACGCACACA--------CCCAUG--UGUGUGGGCCGUUCU
((..(((((.....)))))..)).((((....))))(((((((((((((((....)))))))((((((((--------....))--)))))))))))))). ( -35.30)
>DroSim_CAF1 97854 91 - 1
GCUCGUGGCUUGUUGUUAGGUGGUGGUGUCAUGGCUGGAUGGCUUUGGUUUCGAGAAAUCAACGCACACA--------CCCAUG--UGUGUGGACCGUUCU
((.(((((((..(..(...)..)..).)))))))).((((((..(((((((....)))))))((((((((--------....))--))))))..)))))). ( -30.90)
>DroYak_CAF1 97510 101 - 1
GCUCCUGGCUUGUUGCUAGUUGUUGGUCUCAUGGCUGGAUGGCAUUGCUUUCGAGAAACCAACGCGCACACUCGCACACCCAUGUGUGUGUGGGCGGUCCU
.(((..(((....(((((....(..(((....)))..).)))))..)))...))).......(((.(((((.((((......)))).))))).)))..... ( -35.60)
>consensus
GCUCCUGGCUUGUUGCUAGUUGUUGGUCUCAUGGCUGGAUGGCUUUGGUUUCGAGAAAUCAACGCACACA________CCCAUG__UGUGUGGGCCGUUCU
....(((((.....))))).....((((....))))(((((((.(((((((....)))))))..(((((((..............))))))).))))))). (-21.70 = -22.77 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:58 2006