Locus 4002

Sequence ID 2L_DroMel_CAF1
Location 11,637,376 – 11,637,482
Length 106
Max. P 0.904948
window6310

overview

Window 0

Location 11,637,376 – 11,637,482
Length 106
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 75.08
Mean single sequence MFE -25.90
Consensus MFE -13.45
Energy contribution -14.15
Covariance contribution 0.70
Combinations/Pair 1.15
Mean z-score -2.03
Structure conservation index 0.52
SVM decision value 1.04
SVM RNA-class probability 0.904948
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11637376 106 + 22407834
-GAUAAGCCUGAGCCAGAACAUAAUUCUUGAGUAUUUUCUGUGAAUUAGCUGG-----CAUACUCCAGCCAUAAACAGGCUCGCA---UCCUGCUCAUCCUCUCGCCAACU--CAAU
-(((.(((..(((((((....((((((..(((....)))...)))))).))))-----).......((((.......))))....---))..))).)))............--.... ( -24.60)
>DroPse_CAF1 85541 92 + 1
-GAUAAGCCAGAGCCAACGCAUAAUUCUUGAGUAUUUUCUGUGAAUUAGCUGG-----CAUUUCUAUGCCAUAAACAGGGUCCU-GGAUCUG------UUUUCUG------------
-((((..((((..((...((.((((((..(((....)))...))))))))(((-----(((....)))))).......))..))-))...))------)).....------------ ( -26.10)
>DroSim_CAF1 94490 106 + 1
-GAUAAGCCUGAUCCAGCACAUAAUUCUUGAGUAUUUUCUGUGAAUUAGCUGG-----CAUACUCCAGCCAUAAACAGGCUCGCA---UCCUGCUCUUCCUCUCGCCAACU--CAAU
-....((((((..........((((((..(((....)))...))))))(((((-----......)))))......)))))).((.---....)).................--.... ( -22.80)
>DroEre_CAF1 120727 106 + 1
-GAUAAGCCUGAGCCAGCACAUAAUUCUUGAGUAUUUUCUGUGAAUUAGCUGG-----CAUACUCGAGCCAUAAACAGGCUCGCA---UCCUGCUCAUCCUCUCGCCAACU--CAAU
-(((.(((..((((((((...((((((..(((....)))...)))))))))))-----).....((((((.......))))))..---))..))).)))............--.... ( -31.50)
>DroYak_CAF1 94202 95 + 1
-GAUAAGCCUGAGCCAGCACAUAAUUCUUGAGUAUUUUCUGUGAAUUAGCUGG-----CAUACACUAGCCAUAAACAGGCUCGC----------------UCUUGCCAACUCUCCAU
-....((((((.((((((...((((((..(((....)))...)))))))))))-----)......((....))..)))))).((----------------....))........... ( -24.70)
>DroAna_CAF1 104419 106 + 1
GGAUAAGCCUGAGCCAGCACAUAAUUCUUGAGUAUUUUCUGGAAACUAGCUGGGAUCGCAUCUCUUAGUCAUAAACAGGCUGCCAGGGUCCGAAUUAUUUUCCUGC-----------
((...((((((..(((((......((((.(((....))).))))....)))))(((...........))).....)))))).))((((............))))..----------- ( -25.70)
>consensus
_GAUAAGCCUGAGCCAGCACAUAAUUCUUGAGUAUUUUCUGUGAAUUAGCUGG_____CAUACUCCAGCCAUAAACAGGCUCGCA___UCCUGCUCAUCCUCUCGCCAACU__CAAU
.....((((((..........((((((..(((....)))...))))))(((((...........)))))......)))))).................................... (-13.45 = -14.15 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:53 2006