| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,632,856 – 11,632,947 |
| Length | 91 |
| Max. P | 0.808580 |
| Location | 11,632,856 – 11,632,947 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 65.10 |
| Mean single sequence MFE | -25.38 |
| Consensus MFE | -11.26 |
| Energy contribution | -10.13 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.808580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11632856 91 - 22407834 GCG-CCUGUUGA------AAAGAUU-UUGCUCGUU-UUUUCUAUG---CUAGUUAC------CAUACAAUGCAAUG-----AAGCUGGCGAUGGCAAUUUUUGAACAGGUUAAU ..(-((((((.(------((((...-((((.((((-........(---((((((..------(((........)))-----.)))))))))))))))))))).))))))).... ( -24.10) >DroPse_CAF1 81433 111 - 1 GCGAUCUGUUCAGUGUUCAAAGGUU-CAGUCAGUGU-CUCAUGGCUUUUUUGUUGCCCCCCCCCCGCAAUGCCAUUGCCAUUCACUGGCUGUGAAAA-UUAUGAACAGCUUAAU ..((.(((((((...((((......-(((((((((.-...(((((......(((((.........)))))......))))).)))))))))))))..-...))))))).))... ( -33.40) >DroSec_CAF1 86154 91 - 1 GCG-CCUGUUCA------AAAGAUUUUUGCCCUUUUUUUUCUAUA---UUUGUUAC------UUCACAAUGCAC-------GAGAUGGCGAUGGCAAUUUGUGAACAGGUUAAU ..(-((((((((------...((...(((((.((...((((....---.((((...------...)))).....-------))))....)).))))).)).))))))))).... ( -22.40) >DroSim_CAF1 89947 90 - 1 GCG-CCAGUUCA------AAAGAUU-UUGCCCGUUUUUUUCUAUA---UUUGUUAC------UUCACAAUGCAC-------GAGCUGGCGAUGGCAAUUUGUGAACAGGUUAAU .((-((((((((------((((((.-......)))))))......---.((((...------...)))).....-------))))))))).....((((((....))))))... ( -21.60) >DroYak_CAF1 89602 90 - 1 GCU-UCUGUUGA------AAAGAUU-UUGUCCGUUUGUUUCGAUG---CUUGUUAU------UAUAGAAUGCAG-------AAGCAUGCGAUGGCAAUUCACGAGCAGGUUAAU ...-((((((..------...((..-((((((((.((((((..((---(...((..------....))..))))-------))))).)))..))))).))...))))))..... ( -18.10) >DroPer_CAF1 84405 107 - 1 GCGAUCUGUUCAGUGUUCAAAGGUU-CAGUCAGUGU-CUCCUGGCUUUUUUGUUGCCC----CCCGCAAUGCCAUUGCCAUUCACUGGCUGUGAAAA-UUAUGAACAGCUUAAU ..((.(((((((...((((......-(((((((((.-....((((......(((((..----...)))))......))))..)))))))))))))..-...))))))).))... ( -32.70) >consensus GCG_CCUGUUCA______AAAGAUU_UUGCCCGUUUUUUUCUAUA___UUUGUUAC______CACACAAUGCAA_______AAGCUGGCGAUGGCAAUUUAUGAACAGGUUAAU ....((((((((..............(((((.(((..............((((............)))).............))).)))))..........))))))))..... (-11.26 = -10.13 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:51 2006