Locus 40

Sequence ID 2L_DroMel_CAF1
Location 177,840 – 177,937
Length 97
Max. P 0.786917
window59

overview

Window 9

Location 177,840 – 177,937
Length 97
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 96.72
Mean single sequence MFE -26.56
Consensus MFE -23.66
Energy contribution -24.66
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.89
SVM decision value 0.57
SVM RNA-class probability 0.786917
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 177840 97 + 22407834
CCCCCAAAGGAGGUGAUUAUGUAUCCCAUUCGCAAUGUGCGUUUGUAUCCGUAUC-UGUGGAUGUGUAUUUUCAUCUCCCUGCAUGUAAUUGCAUUGC
........((((((((....((((..((((((((..(((((........))))).-)))))))).))))..)))))))).((((......)))).... ( -28.80)
>DroSec_CAF1 24380 97 + 1
CCCCCAAAGGAGGUGAUUAUGUAUCCCAUUCGCAAUGUGCGUUUGUAUCCGUAUC-UGUGGAUGUGUUUUUGCAUCUCCCUGCAUGUAAUUGCAUUGC
........(((((((.........(.((((((((..(((((........))))).-)))))))).)......))))))).((((......)))).... ( -25.16)
>DroSim_CAF1 24682 97 + 1
CCCCCAAAGGAGGUGAUUAUGUAUCCCAUUCGCAAUGUGCGUUUGUAUCCGUAUC-UGUGGAUGUGUUUUUGCAUCUCCCUGCAUGUAAUUGCAUUGC
........(((((((.........(.((((((((..(((((........))))).-)))))))).)......))))))).((((......)))).... ( -25.16)
>DroEre_CAF1 28317 98 + 1
CCCCCAAAGGAGGUGAUUAUGUAUCCCAUUCGCAAUGUGCGUUUGUAUCCGUAUCCAGUGGAUGUGUAUUUGCAUCUCCGUGCAUGUAAUUGCAUUGC
........(((((((.....((((..(((((((...(((((........)))))...))))))).))))...)))))))(((((......)))))... ( -28.10)
>DroYak_CAF1 25851 98 + 1
CCCCCAAAGGAGGUGAUUAUGUAUCCCAUUCGCAAUGUGCGUUUGUAUCCGUAUCCAGUGGAUGUGUAUUUGCAUCUCCGUGAAUGUAAUUGCAUUGC
........(((((((.....((((..(((((((...(((((........)))))...))))))).))))...)))))))...(((((....))))).. ( -25.60)
>consensus
CCCCCAAAGGAGGUGAUUAUGUAUCCCAUUCGCAAUGUGCGUUUGUAUCCGUAUC_UGUGGAUGUGUAUUUGCAUCUCCCUGCAUGUAAUUGCAUUGC
........(((((((.....((((..((((((((..(((((........)))))..)))))))).))))...))))))).((((......)))).... (-23.66 = -24.66 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:57 2006