Locus 3999

Sequence ID 2L_DroMel_CAF1
Location 11,632,304 – 11,632,423
Length 119
Max. P 0.999084
window6307

overview

Window 7

Location 11,632,304 – 11,632,423
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 97.99
Mean single sequence MFE -31.92
Consensus MFE -30.50
Energy contribution -30.67
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.04
Structure conservation index 0.96
SVM decision value 3.36
SVM RNA-class probability 0.999084
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11632304 119 + 22407834
ACCCA-GCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAAGCUUAAACCAUACGCAAUGCCUCAUUGUGGCGUUGAAAGUUUUCGACGU
.....-(((....))).....(((.(((((((.(((((.((((((.((((((((........)))))))).))))))......(((((((...))))))))))))..))))))).))).. ( -31.60)
>DroPse_CAF1 79537 120 + 1
UCGCAUUCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAGGCUUAAACCAUACGCAAUGCCUCACUGUGGCGUUGAAAGUUUUCGACGU
..(((((.((...(((((.(((((...))))).).))))((((((.((((((((........)))))))).)))))).......))))))).........((((((((....)))))))) ( -32.70)
>DroSim_CAF1 89399 119 + 1
ACCCA-GCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAAGCUUAAACCAUACGCAAUGCCUCAUUGUGGCGUUGAAAGUUUUCGACGU
.....-(((....))).....(((.(((((((.(((((.((((((.((((((((........)))))))).))))))......(((((((...))))))))))))..))))))).))).. ( -31.60)
>DroEre_CAF1 115878 119 + 1
ACCCA-GCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAAGCUUAAACCAUACGCAAUGCCUCAUUGUGGCGUUGAAAGUUUUCGACGU
.....-(((....))).....(((.(((((((.(((((.((((((.((((((((........)))))))).))))))......(((((((...))))))))))))..))))))).))).. ( -31.60)
>DroYak_CAF1 89051 119 + 1
ACCCA-GCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAAGCUUAAACCAUACGCAAUGCCUCAUUGUGGCGUUGAAAGUUUUCGACGU
.....-(((....))).....(((.(((((((.(((((.((((((.((((((((........)))))))).))))))......(((((((...))))))))))))..))))))).))).. ( -31.60)
>DroAna_CAF1 99348 119 + 1
ACCCA-UCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAGGCUUAAACCAUACGCAAUGCCUCAUUGUGGCGUUGAAAGUUUUCGACGU
.....-..((....)).....(((.(((((((.(((((.((((((.((((((((........)))))))).))))))......(((((((...))))))))))))..))))))).))).. ( -32.40)
>consensus
ACCCA_GCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAAGCUUAAACCAUACGCAAUGCCUCAUUGUGGCGUUGAAAGUUUUCGACGU
........((....)).....(((.(((((((.(((((.((((((.((((((((........)))))))).))))))......(((((((...))))))))))))..))))))).))).. (-30.50 = -30.67 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:50 2006