Locus 3998

Sequence ID 2L_DroMel_CAF1
Location 11,631,547 – 11,631,660
Length 113
Max. P 0.591768
window6306

overview

Window 6

Location 11,631,547 – 11,631,660
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 94.96
Mean single sequence MFE -27.46
Consensus MFE -26.14
Energy contribution -26.14
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.07
Structure conservation index 0.95
SVM decision value 0.12
SVM RNA-class probability 0.591768
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11631547 113 - 22407834
UUCAGGGCUGUCAUGUUGUUCCACCAACUGAUGGGUUACAGCUGCCUGCUAAAACUUGUGUCUCGUGCUGUCCGCCCACUUUUUCGGCCCAAUACACCCACACAGCAGCACCA
....(((((((((.((((......)))))))(((((.(((((.....((..........)).....)))))..)))))......))))))....................... ( -28.50)
>DroSec_CAF1 84850 113 - 1
UUCAGGGCUGUCAUGUUGUUCCACCAACUGAUGGGUUACAGCUGCCUGCUAAAACUUGUGUCUCGUGCUGUCCGCCCACUUUUUCCGCCCAUUCCACCCACACAGCUACACCA
....((((.((((.((((......))))))))((((.(((((.....((..........)).....)))))..)))).........))))....................... ( -26.60)
>DroSim_CAF1 88671 113 - 1
UUCAGGGCUGUCAUGUUGUUCCACCAACUGAUGGGUUACAGCUGCCUGCUAAAACUUGUGUCUCGUGCUGUCCGCCCACUUUUUCCGCCCAUUCCACCCACACAGCAACACCA
....((((.((((.((((......))))))))((((.(((((.....((..........)).....)))))..)))).........))))....................... ( -26.60)
>DroEre_CAF1 115135 113 - 1
UUCGGGGCUGUCAUGUUGUUCUACCAACUGAUGGGUUACAGCUGCCUGCUGAAACUUGUGUCUCGUGCUGUCCGCCCACUUUUCCCGCCCCUUCCACCCACACAGCAACACCA
...(((((.((((.((((......))))))))((((.(((((.....((.((.((....)).)))))))))..)))).........)))))...................... ( -29.90)
>DroYak_CAF1 88263 112 - 1
UUCAGGGCUGUCAUGUUGUUCUGCCAACUGAUGGGUUACAGCUGCCUGCUAAAACUUGUGUCUCGUGCUGUCCGCCCACUUUUC-CGCCCCUUUCACCCACACAGCAACACCA
....((((.((((.((((......))))))))((((.(((((.....((..........)).....)))))..)))).......-.))))....................... ( -25.70)
>consensus
UUCAGGGCUGUCAUGUUGUUCCACCAACUGAUGGGUUACAGCUGCCUGCUAAAACUUGUGUCUCGUGCUGUCCGCCCACUUUUUCCGCCCAUUCCACCCACACAGCAACACCA
....((((.((((.((((......))))))))((((.(((((.....((..........)).....)))))..)))).........))))....................... (-26.14 = -26.14 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:49 2006