Locus 3991

Sequence ID 2L_DroMel_CAF1
Location 11,624,188 – 11,624,294
Length 106
Max. P 0.565777
window6295

overview

Window 5

Location 11,624,188 – 11,624,294
Length 106
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 83.89
Mean single sequence MFE -48.95
Consensus MFE -33.07
Energy contribution -33.18
Covariance contribution 0.12
Combinations/Pair 1.21
Mean z-score -2.19
Structure conservation index 0.68
SVM decision value 0.06
SVM RNA-class probability 0.565777
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11624188 106 - 22407834
UGCU---UACUGCUGAUGUGGGCGGUGG---UGGUGUUGCCACCACUGCGGCUGGUGGUGGAGUUGCAACCGCUGGCAGGCUGGUGGGUGACUGGGCGAAUCGGUAGCCGGG
.(((---(((((((.......(((((((---(((.....)))))))))).((..(((((.........)))))..)).))).)))))))..((.(((.........))).)) ( -50.00)
>DroSec_CAF1 77498 106 - 1
UGCU---UACUGCUGAUGUGGGCGGUGG---UGGUGUUGCCACCACUGCGGCUGGUGGUGGAGUUGCAACCGCUGGCAGGCUGGUGGGUGACUGGGCGAAUCGGUAGCCGGG
.(((---(((((((.......(((((((---(((.....)))))))))).((..(((((.........)))))..)).))).)))))))..((.(((.........))).)) ( -50.00)
>DroSim_CAF1 81277 106 - 1
UGCU---UACUGCUGAUGUGGGCGGUGG---UGGUGUUGCCACCACUGCGGCUGGUGGUGGAGUUGCAACCGCUGGCAGGCUGGUGGGUGACUGGGCGAAUCGGUAGCCGGG
.(((---(((((((.......(((((((---(((.....)))))))))).((..(((((.........)))))..)).))).)))))))..((.(((.........))).)) ( -50.00)
>DroEre_CAF1 107887 106 - 1
UGCA---AGCUGCUGAUGUGGGCGCUGG---UGGUGUGGCCACCACUGCGGCUGGUGGUGGAGUUGCGGCCGCUGGCAGGCUGGUGGGUGACUGGGCGAAGCGGUAGCCGGG
..(.---.(((((((........((..(---(((((..(((((((((......))))))))..)..).)))))..)).(.(..((.....))..).)....)))))))..). ( -46.10)
>DroYak_CAF1 80902 109 - 1
UGCU---UACUGCUGAUGUGGGCGGUGGUGGUGGUGUGGCCACCACUGCUGCUGGUGGUGGAUUUGCAACCGCUGGCAGGCUGGUGGGUGACUGGGCGAAGCGGUAGCCGGG
.(((---.((((((......((((((((((((......))))))))))))((..(((((.........)))))..)).(.(..((.....))..).)..))))))))).... ( -51.90)
>DroAna_CAF1 90899 103 - 1
UGGGUGGUGCUGCUGCUGGUGGCAGUGC---CGGUGCUCCCUCAAUGGCACCACCUGGCAUGG------GUGCUGGCUGGCUGGUGGGUGAUUGGGCGAAGCGGUAUCCUGG
.((((((..((((((....))))))..)---)(.((((.(((((((.((.(((((.(((...(------((....))).)))))))))).)))))).).)))).)))))... ( -45.70)
>consensus
UGCU___UACUGCUGAUGUGGGCGGUGG___UGGUGUUGCCACCACUGCGGCUGGUGGUGGAGUUGCAACCGCUGGCAGGCUGGUGGGUGACUGGGCGAAGCGGUAGCCGGG
.........((((((((....(((((((...(((.....))))))))))..(((.((((((........)))))).)))(((..(((....))))))..))))))))..... (-33.07 = -33.18 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:39 2006