Locus 399

Sequence ID 2L_DroMel_CAF1
Location 1,217,355 – 1,217,449
Length 94
Max. P 0.662560
window632

overview

Window 2

Location 1,217,355 – 1,217,449
Length 94
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.51
Mean single sequence MFE -19.49
Consensus MFE -13.93
Energy contribution -13.57
Covariance contribution -0.36
Combinations/Pair 1.12
Mean z-score -1.54
Structure conservation index 0.71
SVM decision value 0.27
SVM RNA-class probability 0.662560
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1217355 94 - 22407834
ACACAUGUUGCCGCAAUAAAAAUGUCAACACACACAUAAAACAUCUUCUAAAAUGGCAUUUGCA---------GCAGGCAAC---GAAUUCCGAAGGACCAAACGG--------------
.....(((((((((.....((((((((..........................))))))))...---------)).))))))---)....(((..........)))-------------- ( -17.27)
>DroPse_CAF1 16861 120 - 1
ACACAUGUUGCCGCAAUAAAAAUGUCAACACACACAUAAAACAUCUUCUAAAAUGGCAUUUGCAGAGGCACAAGCAGGCGGCAUGGCAUUCCAGUAGACCACCAACAAAAAAACAAAACG
...(((((((((((.....((((((((..........................))))))))((....))....)).)))))))))................................... ( -22.77)
>DroSim_CAF1 13004 94 - 1
ACACAUGUUGCCGCAAUAAAAAUGUCAACACACACAUAAAACAUCUUCUAAAAUGGCAUUUGCA---------GCAGGCAGC---GAAUUCCGAAGGACCAACCGG--------------
.....(((((((((.....((((((((..........................))))))))...---------)).))))))---)....(((..........)))-------------- ( -17.67)
>DroEre_CAF1 12731 94 - 1
ACACAUGUUGCCGCAAUAAAAAUGUCAACACACACAUAAAACAUCUUCUAAAAUGGCAUUUGCA---------GCAGGCAGC---GAAUUGCGAAGGACCAACCGG--------------
.....(((((((((.....((((((((..........................))))))))...---------)).))))))---).........((.....))..-------------- ( -17.57)
>DroYak_CAF1 13796 94 - 1
ACACAUGUUGCCGCAAUAAAAAUGUCAACACACACAUAAAACAUCUUCUAAAAUGGCAUUUGCA---------GCAGGCAGC---GAAUUCCGAAGGACCAACCGG--------------
.....(((((((((.....((((((((..........................))))))))...---------)).))))))---)....(((..........)))-------------- ( -17.67)
>DroPer_CAF1 16665 120 - 1
ACACAUGUUGCCGCAAUAAAAAUGUCAACACACACAUAAAACAUCUUCUAAAAUGGCAUUUGCAGAGGCACAAGCAGGCGGCAUGGCAUUCCAGCAGACCACCAACAAAAAAACAAAACG
...(((((((((((.....((((((((..........................))))))))((....))....)).)))))))))((......))......................... ( -23.97)
>consensus
ACACAUGUUGCCGCAAUAAAAAUGUCAACACACACAUAAAACAUCUUCUAAAAUGGCAUUUGCA_________GCAGGCAGC___GAAUUCCGAAGGACCAACCGG______________
......((((((.......((((((((..........................))))))))((..........)).))))))...................................... (-13.93 = -13.57 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:59 2006