Locus 3984

Sequence ID 2L_DroMel_CAF1
Location 11,603,508 – 11,603,625
Length 117
Max. P 0.545524
window6283

overview

Window 3

Location 11,603,508 – 11,603,625
Length 117
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 94.13
Mean single sequence MFE -25.87
Consensus MFE -22.44
Energy contribution -22.67
Covariance contribution 0.22
Combinations/Pair 1.06
Mean z-score -1.36
Structure conservation index 0.87
SVM decision value 0.02
SVM RNA-class probability 0.545524
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11603508 117 - 22407834
AAGUGUGCAUGUGUUUCUGUGGCAUUACGUGCAUUGCAUGUCGAAUGUGUGUAACAAAGUCUAAA-AAACAUCAAGCACAAACACAAAGCAGUGGUAACUUUAUCUAAAGUACAACAU
...(((((.(((((((....(((.(((((..((((........))))..)))))....)))....-))))).)).)))))..(((......)))(((.((((....)))))))..... ( -26.60)
>DroSec_CAF1 58148 117 - 1
AAGUGUGCAUGUGUUUCUGUGGCAUUACGUGCAUUGCAUGUCGAAUGUGUGUAACAAAGUCUAAA-AAACAUCAAGCACAAACACAAAGCAGUGGUAACUUUAUCUAAAGUACAACAU
...(((((.(((((((....(((.(((((..((((........))))..)))))....)))....-))))).)).)))))..(((......)))(((.((((....)))))))..... ( -26.60)
>DroSim_CAF1 60879 117 - 1
AAGUGUGCAUGUGUUUCUGUGGCAUUACGUGCAUUGCAUGUUGAAUGUGUGUAACAAAGUCUAAA-AAACAUCAAGCACAAACACAAAGCAGUGGUAACUUUAUCUAAAGUACAACAU
...(((((.(((((((....(((.(((((..((((........))))..)))))....)))....-))))).)).)))))..(((......)))(((.((((....)))))))..... ( -26.60)
>DroEre_CAF1 89095 113 - 1
----GUGCAUGUGUUUCUGUGGCAUUACGUGCAUUGCAUGUCGAAUGUGUGUAACAAAGUCUAAA-AAACAUCAAGCACAAACACAAAGCAGUGGUAACUUUAUCUAAAGUACAACAU
----((((.(((((((....(((.(((((..((((........))))..)))))....)))....-))))).)).))))...(((......)))(((.((((....)))))))..... ( -25.70)
>DroYak_CAF1 60129 113 - 1
----GUGCAUGUGUUUCUGUGGCAUUACGUGCAUUGCAUGUCGAAUGUGUGUAACAAAGUCUAAA-AAACAUCAAGCACAAACACAAAGCAGUGGUAACUUUAUCUAAAGUACAACAU
----((((.(((((((....(((.(((((..((((........))))..)))))....)))....-))))).)).))))...(((......)))(((.((((....)))))))..... ( -25.70)
>DroAna_CAF1 72142 118 - 1
GUGUGUGUGUGUGUUUUUGUGGCAUUACGUGCAUUGCAUGUCGAAUGUUUGUAACAAAGUCUAAAAAAACAUCAAGCACAAACAUCGAACAGCGGCAAGUUUAUCUAAAGUACAACAU
.((((..((.(((..(((((.((....(((((...)))))((((.(((((((......((........)).......)))))))))))...)).)))))..))).))...)))).... ( -24.02)
>consensus
AAGUGUGCAUGUGUUUCUGUGGCAUUACGUGCAUUGCAUGUCGAAUGUGUGUAACAAAGUCUAAA_AAACAUCAAGCACAAACACAAAGCAGUGGUAACUUUAUCUAAAGUACAACAU
....((((.(((((((....(((.(((((..((((........))))..)))))....))).....))))).)).))))...(((......)))(((.((((....)))))))..... (-22.44 = -22.67 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:27 2006