| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,599,887 – 11,599,982 |
| Length | 95 |
| Max. P | 0.516596 |
| Location | 11,599,887 – 11,599,982 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 74.30 |
| Mean single sequence MFE | -23.02 |
| Consensus MFE | -8.50 |
| Energy contribution | -8.78 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.37 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11599887 95 + 22407834 UGGUCAGAAAUAUGUAUAUGUAUCCAUAGGGACAUGUGCA--GCCAGUC--C----AAAAAAAAAA---AAUAGAAAUGAAGGGCAAACUAGC--AAGCCAGCUAUUU ((((........(((((((((.(((...))))))))))))--))))(((--(----..........---............))))....((((--......))))... ( -18.95) >DroSec_CAF1 54127 95 + 1 UGGGCAGAAAUAUGUAUAUGUAUCCAUGGGGCCAUGUGCA--GCCAGUC--A----AAAAAAAAAG---AAUAGAAACGAAGGGCAAACUAGC--AAGCCAGCUAUUU ..(((.......((((((((..((....))..))))))))--(((..((--.----..........---.........))..)))........--..)))........ ( -21.05) >DroSim_CAF1 56778 97 + 1 UGGCCAGAAAUAUGUAUAUGUAUCCAUGGGGCCAUGUGCA--GCCAGUCCCA----AAAAAAAAAG---AAUAGAACCGAAGGGCAAACUAGC--AAGCCAUCUAUUU ((((........((((((((..((....))..))))))))--((.((((((.----..........---............)))...))).))--..))))....... ( -20.70) >DroEre_CAF1 85033 100 + 1 UGGCCAGAAAUAUGUAUAUGUAACCAUGGGGAGAUGUGCA--GCCAGUU--C----AGAAAAAAAAAACGAAUGGAAUGAAGGGCAAACUAGCGAAAGCCUUCUAUGU .....((((...(((((((.(..(....)..).)))))))--(((..((--(----(....................)))).)))......((....)).)))).... ( -19.85) >DroYak_CAF1 55784 95 + 1 UGGCCAGAAAUAUGUACAUGUUUCCAUAGGGACAUGUGCA--GCCAGUU--C----AAAAAAAAGG---AAAUGGAUUGAAGGGCAAACUGGC--AAGCCAGCUAUUU ..(((((.....(((((((((..(....)..)))))))))--(((..((--(----((........---.......))))).)))...)))))--............. ( -31.06) >DroAna_CAF1 67747 99 + 1 UGGCCAGAAAUAUGGCUA-----ACAUCGUAACAUGUGCACAGUGAUUU--CGUUGAAAAACGAAAAGCGUGUCGGGAAAAAGGCCAGCAGGA--AUGCAUGAAAUUU (((((....(((((....-----.........)))))((((.((..(((--((((....))))))).)))))).........)))))(((...--.)))......... ( -26.52) >consensus UGGCCAGAAAUAUGUAUAUGUAUCCAUGGGGACAUGUGCA__GCCAGUC__C____AAAAAAAAAA___AAUAGAAAUGAAGGGCAAACUAGC__AAGCCAGCUAUUU .(((........((((((((...((...))..))))))))..(((..((.............................))..)))............)))........ ( -8.50 = -8.78 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:24 2006